Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0487 |
Symbol | |
ID | 5372653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 551902 |
End bp | 553662 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640828692 |
Product | type II secretion system protein E |
Protein accession | YP_001364718 |
Protein GI | 152999037 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACCCA GATTAAAAAT GCGTTTGGGC GATCTGTTAG TTCAAGAAGC CATTATTACT GAAGCGCAGT TGCAACAGGC GTTAGGCGAG CAGCGCAATA CGGGCAAAAA ACTGGGCCGT ACCCTCATTG ATCTGCAATC GATTACAGAG CATCAGTTGC TGCAGTTTTT GTCGCAACAA TTGAATGTGC CTTTGCTTGA TATCAGTAAA ATGCCAATCC CTGCGGAAGT CGTGCATCTT ATTCCTGAGG TGCAAGCCCG ACGTTTCCGC GCTTTAGCGG TTGAAGACAG GGGCGATAGC GTACTGGTAG CTATGAGTGA TCCAGCCGAT TTGCAGGCGC TCGATCACCT CGAAATGCTT ATCGCACCTA AGCGTTTGAA GTTAGCTGTA GCGCCCGAGC AGCAACTGCT ACAAGCGTTT GATAACTTAT ATCGCCGTAC AGAGCAAATT GCTCAGATCG CCGGTAAGCT CGAAGAAGAA TACGCCGCCG ATGAGATGTT CGATTTAGCC AGTCTGACTT CTGGGGACAG TGACAATGAA ACTACAGTGG TTAAGCTGCT GCAGTCGATT TTTGAGGATG CGGTGCAAAT GCGCGCCTCG GATATCCATA TCGAACCCGG TGATAAAGCC CTACGTATTC GCCAGCGTAT CGATGGCCAG CTACACGAAA CGATTCTGAA TGAAGTTAAT ATTGCCGCAG CTTTAGTATT GCGACTTAAG TTGATGGCTG GACTCGATAT TTCTGAAAAA CGTTTGCCGC AGGATGGCCG TTTCCACATG GAAATAAAAG GTCATCATAT CGATGTGCGT ATGTCGACTA TGCCGATTTA CCACGGCGAA TCTGTGGTAA TGCGTTTACT CGACCAATCG GCGGGTTTAT TGACCCTAAA CGAAACCGGT ATGCCGCCTG CTATTTTGGC GCGTATTCGT AAACAGATTA AACGTCCCCA CGGCATGTTG TTGGTCACTG GTCCCACGGG TAGCGGCAAA ACGACCACCT TGTACGGTAT TTTGAGCGAG CTCAACACCG CCGACCGTAA GATCATCACA GTGGAAGATC CGGTCGAGTA TCAATTGCCA CGGATAAACC AAGTGCAAGT TAACCATAAG ATTGGCTTGA ACTTTTCCAA CGTATTGCGC ACCACCTTGC GTCAAGACCC CGATATCATC ATGGTCGGGG AAATGCGTGA TCAAGAAACC GTTGAGATTG GCCTGAGGGG CGCATTAACG GGTCACTTTG TGCTATCGAC CTTGCACACT AACGATGCGG TCACCAGTGC GCTGCGTTTG CTCGATATGG GCGCCGCCAG TTATTTAGTT GCCAGTGCCT TAAGGGTGAT TATTGCCCAG CGTTTAGTGC GACGTGTTTG TCATAACTGT GGCGTTGAGT ATCAGCCGAC ACCGCAGGAA AAAGCCTGGC TGAGTAGCGT GAGTCGCAAA GATTTTAGCC ATGCAAACTT TAGAATCGGT ACCGGTTGCC AGAGTTGTAA CGGCAGTGGT TATCGTGGCC GTATTGGTAT TTTTGAGATC CTCGAGCTCG ACGAAAAGAT GATCGATGCG ATGCGTACCG GTAATCCGCA GGATTTCGCC AGAGCCGCGT TGCAGAGCCC TAACTTTACC CCGCTCGCCG AGTCAGCGTT GCAATATTTG AGTGAAGGCA TGACGACCAT TGAAGAGGTG GCTAAGCTGG TAGAGGACGT GAGTGAATCT CAGATACCTT TGTCGAAGGA TATTATTAGC CAACAAGGGG TTGAGGCGTA A
|
Protein sequence | MKPRLKMRLG DLLVQEAIIT EAQLQQALGE QRNTGKKLGR TLIDLQSITE HQLLQFLSQQ LNVPLLDISK MPIPAEVVHL IPEVQARRFR ALAVEDRGDS VLVAMSDPAD LQALDHLEML IAPKRLKLAV APEQQLLQAF DNLYRRTEQI AQIAGKLEEE YAADEMFDLA SLTSGDSDNE TTVVKLLQSI FEDAVQMRAS DIHIEPGDKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK LMAGLDISEK RLPQDGRFHM EIKGHHIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG MPPAILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP RINQVQVNHK IGLNFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEYQPTPQE KAWLSSVSRK DFSHANFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT PLAESALQYL SEGMTTIEEV AKLVEDVSES QIPLSKDIIS QQGVEA
|
| |