Gene Shew185_0308 details

Gene Information

• Locus tag: Shew185_0308
• ID: 5373347
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 350598
• End bp: 352427
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640828508
• Product: GTP-binding protein TypA
• Protein accession: YP_001364541
• Protein GI: 152998860
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.196053
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAAGAG GTTTATCCGT GCTAGAGAAT TTACGTAACA TCGCCATTAT TGCACACGTT 
GACCATGGCA AAACGACCCT GGTAGACAAG TTGCTGTCAC AGTCAGGCAC CCTTGCAACC 
CGAGGAGAAG CCACTGAGCG GGTGATGGAC TCCAACGATC TTGAAAAGGA ACGTGGGATC 
ACGATTCTGG CAAAGAATAC TGCCATCAAG TGGAACGACT ACCGTATTAA CATCGTTGAT 
ACCCCAGGCC ACGCCGATTT CGGTGGTGAG GTTGAGCGTG TTCTGTCTAT GGTTGACTCA 
GTATTATTGC TGGTTGATGC CGTTGACGGT CCAATGCCAC AAACTCGCTT TGTAACGAAG 
AAAGCGTTTG CTCAAGGCTT AAAGCCAATC GTTGTTATCA ACAAGATTGA CCGTCCAGGT 
GCACGCCCAG ATTGGGTTAT CGACCAAGTA TTCGACCTGT TCGACAACTT AGGCGCAACC 
GACGAGCAGT TAGATTTCCC AATCGTTTAC GCTTCTGCGT TAAACGGTTT TGCAACGTTA 
GATCCGGATG TAGCGAGCGA TGATATGACG CCGCTGTTCC AAACTATCGT TGAAAAAGTA 
TCTTTCCCAG ATGCTGACGC CGAAGGTTCG TTCCAGATGC AAATTTCGCA AATCGACTAC 
AACTCATACG TGGGTGTTAT CGGTATCGGC CGCATCAAGC GTGGTAGCGT TAAAACTAAC 
CAACAAGTGA CCATTATTGG CGCTGATGGC AAAACTCGTA ACGGTAAAAT GGGCCAAGTA 
TTAGGTTACA TGGGTCTAGA CCGTACTGAA GTTGAAATTG CTAACGCGGG CGACATCGTT 
GCTATCACAG GTTTAGGCGA GCTGAAAATT TCTGACACTA TCTGTGCCGT TGGCGCAGTA 
GAAGCAATGC CAGCTTTGAC TGTTGATGAA CCAACTCTGA CTATGACTTT CCAAGTTAAC 
ACTTCACCTT TTGCTGGTAA AGAAGGTAAG TATGTGACTT CACGTAACAT TCTGGAACGT 
CTGCAAACAG AATTAGTCCA CAACGTGGCA CTGCGTGTTG AAGAAACAGA AAGTCCAGAT 
CGCTTCCGCG TATCTGGTCG TGGTGAATTG CATTTATCAA TCCTGATTGA AAACATGCGT 
CGTGAAGGTT ACGAGTTAGC CGTATCACGT CCAGAAGTAA TTCTGAAAAC CATCGACGGT 
GAACTGTGTG AACCATACGA GACCTTGACT GTTGACGTTG AAGAAGAAGA TCAAGGCACA 
GTGATCGAGA AGTTAGGTAC CCGTAAAGCT GAAATGAAAG ACATGCAGCT TGATGGTAAA 
GGTCGTGTAC GTATCGACTT CATCATCCCA AGTCGTGGTT TAATCGGTTT CCAAACTGAA 
TTCTTAACTG CGACTTCTGG TACTGGTCTA ATCTACCACT CGTTTGACCA TTACGGTCCA 
CACAAAGGTG GCGATATCGG TCAACGCGCT AACGGCGTAT TGATCTCTAA CGCAACGGGT 
AAGGCTCTGA CCTTCGCACT GTTCGGTCTA CAAGATCGCG GTCGTCTCTT TATCGGCCAT 
GCCGCTGAAG TATACGAAGG CCAAGTAGTT GGTATCCACG CTCGCTCAAA CGATCTGACA 
GTTAACTGTC TGAAAGGTAA GCAGCTGACC AACATGCGTG CTTCTGGTAC TGACGAAGCT 
CAAGTACTGA CTACGCCAAT CACAATGACA CTTGAGCAAG CGCTTGAGTT CATCGATGAT 
GACGAATTAG TTGAAGTAAC GCCTAAGAAC ATTCGTGTTC GTAAAAGACA CTTGACTGAA 
AACGATCGTA AGCGCTTTAA CCGCGCTTAA 

 

Protein sequence

MVRGLSVLEN LRNIAIIAHV DHGKTTLVDK LLSQSGTLAT RGEATERVMD SNDLEKERGI 
TILAKNTAIK WNDYRINIVD TPGHADFGGE VERVLSMVDS VLLLVDAVDG PMPQTRFVTK 
KAFAQGLKPI VVINKIDRPG ARPDWVIDQV FDLFDNLGAT DEQLDFPIVY ASALNGFATL 
DPDVASDDMT PLFQTIVEKV SFPDADAEGS FQMQISQIDY NSYVGVIGIG RIKRGSVKTN 
QQVTIIGADG KTRNGKMGQV LGYMGLDRTE VEIANAGDIV AITGLGELKI SDTICAVGAV 
EAMPALTVDE PTLTMTFQVN TSPFAGKEGK YVTSRNILER LQTELVHNVA LRVEETESPD 
RFRVSGRGEL HLSILIENMR REGYELAVSR PEVILKTIDG ELCEPYETLT VDVEEEDQGT 
VIEKLGTRKA EMKDMQLDGK GRVRIDFIIP SRGLIGFQTE FLTATSGTGL IYHSFDHYGP 
HKGGDIGQRA NGVLISNATG KALTFALFGL QDRGRLFIGH AAEVYEGQVV GIHARSNDLT 
VNCLKGKQLT NMRASGTDEA QVLTTPITMT LEQALEFIDD DELVEVTPKN IRVRKRHLTE 
NDRKRFNRA