| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0289 |
|---|
| Symbol | |
|---|
| ID | 5373286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 328364 |
|---|
| End bp | 329533 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640828490 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001364523 |
|---|
| Protein GI | 152998842 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTG ATCCCCAAGC CCTATTACTC ATCAAATTTA TTTGCCTACT GGCCAGCACT
GCAGCCGTGG CATGGGGACT CATTGCTAAA CCCTTACAGA TTGCCACTCG GGCCAGTATG
CGCTTTTCTC TGGCGAACTT GTTCGTCCTC CTTGGCATCA TACTCAACAG CCAACGCTCA
GAAGCCTCCA GTTACCTTTT TTGGTTCTGC TCCGATATGG CGATTTTGTT TGGATTCATC
CTATTACGCT GGGGTACTAA GGCACTTTTC AGGCTGAGTC CCAGCGTTAA ATCCGATCTT
ATTCTCTTGG CAATCACGGC CAGTGTGATG CTCTCGGTTC CCCCCAACTT CAGCTCCGAA
CGTACTTTAG CCGTTGTTTT CTCCGCCTGC GCCGCGCTGA TTTTTACCAT GCTAACGCGG
GATAACTATC AGGCCATTAA ACGCGATACG GGGAATCGAG TCGCCATCGC TATGGTCATG
CCTTTAGTCG CTATGGTGGG TATTTTTACC ATTCGCATCT TTATCGCCCT GCTTTCCCCA
GAAGAAAGTC CGATGTTTAT CGCCATGCAC ACGCACGAAG CGATACCTGT GCTGTGGTTT
TATGTATTTC TAACCCTATT GATCAATATA GTGATGATAG GTAATGCCAT GACGCGACTC
GTCAGCAAAA TCCGTATGTT AGCGGAACGG GATCAACTCA CAGGCCTGTG GAATCGCCGG
GCTATGCATA AATTTCTCAA CAATATCCAT CAACGCTGGC TAAGGGATAA TGTGCCTTAC
AGTATGATTT TATTGGATCT TGACCATTTT AAAGAGATTA ACGATCAATA CGGTCACGAT
GCGGGTGATC TCGCCCTGCT GACGGCGGCG AGACTGTTTG GATCAGTATT GCGAGAAAAT
GATGCCCTAT GTCGTCACGG TGGTGAGGAG TTTCTGGTGA TTTTGCCCAC GACCGATGCA
CCCGCCGCCA GAGCCGTTGC CGAGAAATTG CATCAAGTAC TTAAGGACAA TTCATTTGTC
TGTCAAGGTG TTACGATAAA AATCCATGCC AGTTTAGGTT ACGCCACTAT CTATCAAGGA
TGCCAGCCCG ACAAGCTACT CATTCAAGCG GACCAAGCCA TGTACCGCGC AAAATCTGAA
GGCCGAGATC GTATTTGTCA ATCTTGCTAG
|
|---|
| Protein sequence | MIFDPQALLL IKFICLLAST AAVAWGLIAK PLQIATRASM RFSLANLFVL LGIILNSQRS
EASSYLFWFC SDMAILFGFI LLRWGTKALF RLSPSVKSDL ILLAITASVM LSVPPNFSSE
RTLAVVFSAC AALIFTMLTR DNYQAIKRDT GNRVAIAMVM PLVAMVGIFT IRIFIALLSP
EESPMFIAMH THEAIPVLWF YVFLTLLINI VMIGNAMTRL VSKIRMLAER DQLTGLWNRR
AMHKFLNNIH QRWLRDNVPY SMILLDLDHF KEINDQYGHD AGDLALLTAA RLFGSVLREN
DALCRHGGEE FLVILPTTDA PAARAVAEKL HQVLKDNSFV CQGVTIKIHA SLGYATIYQG
CQPDKLLIQA DQAMYRAKSE GRDRICQSC
|
|---|
| |