| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0231 |
|---|
| Symbol | |
|---|
| ID | 5373263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 265945 |
|---|
| End bp | 267924 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640828428 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_001364465 |
|---|
| Protein GI | 152998784 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000335449 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCAG AACTTGGACA CTTTGCGCTG ATAATAGGGG TGGCTTTTGC ATTCTTATTA
ATCAGCGTCC CCCTAATAGG TGTTGCCCGT AAAGATCAAT ACCTTGTTAG GTATGCTTGG
CCGTTAACGT ACGGAATGTT CTTTTTTATC ACTGTATCAG TTGTCGTGCT GGCCTATAGC
TTTGCCGTCG ATGATTTCTC AGTCGCTTAT GTGGCACATC ATTCTAATTC TCAGTTACCT
ATCTTCTTTA AGATTTCGGC CGTATGGGGC GGTCATGAAG GGTCACTGTT GTTCTGGGTG
TTTGCTTTAT CGACTTGGGC TGCAGCGGTT GCCTTATTTA GTAAAGGTTT AGAGGAAGTG
TTTACTGCGC GTGTACTGGC AGTATTAGCA CTGATCGTGA TTGGCTTTAG CTTATTCATG
CTACTCACCT CTAGCCCATT CGAACGTTTG TTCCCGATCC CTGCCGAAGG TCGTGACTTA
AACCCTATGC TGCAGGATGT GGGGTTAATC TTCCATCCAC CTATGCTGTA TTTAGGTTAT
GTGGGTTTCT CGGTGAGCTT TGCATTTGCG ATTGCCGCGC TGATGAGCGG TCGTCTCGAT
TCTGCATGGG CTCGTTGGAC TCGTCCTTGG ACCTTAGCCG CTTGGATCTT CCTAACTGGA
GGTATCGCGC TAGGTTCTTG GTGGGCATAT TATGAATTAG GCTGGGGCGG TTGGTGGTTC
TGGGATCCTG TTGAGAACGC CTCTTTCATG CCTTGGTTAG TGGGTACTGC GCTTGTTCAC
TCTTTGATTG TGACCGAGAA ACGCGGCGCC TTCCGTAATT GGACCGTATT ACTGTCTATA
TTCGCTTTCT CTTTAAGTTT GCTTGGTACC TTTATTGTTC GCTCAGGCGT ATTAACCTCA
GTACATTCAT TCGCAGCCGA TCCAAGCCGC GGTATGTTTA TTCTGTTGTT ACTTGGCTTA
GCGATTGGCG GTTCATTAAC ACTGTTTGCC TTCCGCGCCA GTGAAATGAG CAGTCCAGCC
CGTTTCGAGC TGAAGTCTAA AGAAACCATG CTATTGGTCT GTAACGTGTT ACTGACTGTT
GCCGCAGGTA CTGTGCTATT GGGTACACTC TATCCATTGC TCATCGATGC ACTCGGCATG
GGTAAAATTT CTGTAGGACC TCCATACTTC AACGCTGTAT TTGTGCCTAT CGTATTAGTC
TTATTTGGCT TTATGGGTAT TGGTCCAATT ATCCGTTGGA AAAAATCGAA AGCAGGCGAG
CTTAGGCGTC AGCTATTGAT CCCTGCAATG ATTGCTGCGG CTATCGGTAT TGTGACGCCA
TTTATCGTCG ATGGTGTATT CAATACTTGG GTTGCCTTTG GTATTGCAGC GGCTTCTTGG
ATTATCCTAG CGACAGCAAG AGCGGCCTAT AACATGGTCA AGTCGAAAGA AGGTGATATC
AGCATCAGCC GTATGGGCCG TAGTCAGCTG GGCATGATCT TCGCGCATCT TGGTATTGCT
GTGTCTGTGA TTGGTGCCAC TATGGTGTCG AATTACTCGA TTGAGAAAAG TGTTCGCATG
GGACCTGGTA TTAGCCAAGA GCTTGCGGGT TATACCTTTA AGTATCTGGA GACCAAAAAC
GTAGTGGGTC CTAACTACAC TGCAATGCAG GGACAGATAG AAGTCTACAA AGGTGATGAG
CTGCTGACAT TACTCAAGCC AGACCGTCGT CAATATAATG TGCGTACTAT GGACATGACA
GAAGCGGGTA TCGACTGGGG TCTATTCCGT GACTTGTATG TGACCATGGG CGATCCAATT
ACCAGCACTG AATTTGCGGT TCGTTTGAAC TACAAACCGT TCGTGCGTTG GTTATGGTTT
GGGGCAATTT TCATGATGAT TGGTGGATTC TTCGCGGCAT CGGATAAACG TTACCGTGCG
AAAGTCACTG CAGCTGTCGC GCCTTCGGCC GAAAAGGCAA AATTGGCAAC GGCTCAATAA
|
|---|
| Protein sequence | MIPELGHFAL IIGVAFAFLL ISVPLIGVAR KDQYLVRYAW PLTYGMFFFI TVSVVVLAYS
FAVDDFSVAY VAHHSNSQLP IFFKISAVWG GHEGSLLFWV FALSTWAAAV ALFSKGLEEV
FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPIPAEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGRLD SAWARWTRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGIGPI IRWKKSKAGE
LRRQLLIPAM IAAAIGIVTP FIVDGVFNTW VAFGIAAASW IILATARAAY NMVKSKEGDI
SISRMGRSQL GMIFAHLGIA VSVIGATMVS NYSIEKSVRM GPGISQELAG YTFKYLETKN
VVGPNYTAMQ GQIEVYKGDE LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
TSTEFAVRLN YKPFVRWLWF GAIFMMIGGF FAASDKRYRA KVTAAVAPSA EKAKLATAQ
|
|---|
| |