Gene Shew185_0211 details

Gene Information

• Locus tag: Shew185_0211
• Symbol: rplF
• ID: 5370887
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 253123
• End bp: 253656
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640828408
• Product: 50S ribosomal protein L6
• Protein accession: YP_001364445
• Protein GI: 152998764
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0000116546
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TAGCAAAAGC ACCAGTATCT ATTCCAGCTG GCGTAGAGGT GACCTTGAAC 
GAACAGACCC TTACCGTCAA AGGCGGAAAA GGTAGTCTGA CTCGAGTGAT CAACAATGCG 
GTCAATGTTG TTATTGAAGC TGGCGTAGTT AAGTTCCTCC CTGTTGAAGG CGTTTCTAAC 
GCTTGGGCAC AGGCTGGTAC AACTCGTGCA TTAGTAAACA ACATGGTTGT TGGTGTATCT 
CAAGGTTTTG AGCGTAAATT AAAGTTAGTT GGCGTTGGTT ACCGTGCGAA ACTCGTCGGT 
TCTGACATTG ACCTTACTTT AGGTTTCTCT CATCCGTTAG TACACAAACT GCCCGCAGGC 
GTTACTGCAG AGTGCCCTAG CCAAACTGAC ATCGTCCTAC GTGGCGTTGA TAAACAGTTA 
ATTGGCCAAG TCGCTGCTGA GATTCGCGGA TACCGTCCAC CAGAGCCATA TAAAGGCAAG 
GGTGTTCGCT ATGACGACGA AGTAGTACGC CGTAAAGAGG CTAAGAAGAA GTAG 

 

Protein sequence

MSRVAKAPVS IPAGVEVTLN EQTLTVKGGK GSLTRVINNA VNVVIEAGVV KFLPVEGVSN 
AWAQAGTTRA LVNNMVVGVS QGFERKLKLV GVGYRAKLVG SDIDLTLGFS HPLVHKLPAG 
VTAECPSQTD IVLRGVDKQL IGQVAAEIRG YRPPEPYKGK GVRYDDEVVR RKEAKKK