| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0208 |
|---|
| Symbol | rplE |
|---|
| ID | 5370759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 251840 |
|---|
| End bp | 252379 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640828405 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_001364442 |
|---|
| Protein GI | 152998761 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000274213 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAC TGCATGATAA ATACCAAGAG ACTGTTGTCG CTGAACTTGC TAAAAAGTTC
GGTTATACCA GTGTCATGCA AGTCCCTCGG ATTGAGAAAA TCACCCTGAA TATGGGTGTT
GGCGAAGCTG TTGCAGACAA GAAAATCATG GACCATGCTG TCCGTGATAT GACTGCAATC
GCTGGTCAAA AACCAGTAGT GACTGTAGCT CGTAAGTCAG TTGCTGGTTT TAAAATCCGT
GAAGGCTACC CTATTGGCTG TAAAGTTACC CTACGCGGTG AGCGTATGTG GGAATTCTTA
GAGCGTTTAG TCGATATCGC AATCCCACGT ATTCGTGACT TCCGTGGCTT AAGCGCTAAA
GCGTTTGACG GCCGTGGTAA CTACGCAATG GGCGTGCGTG AGCAGATCAT CTTCCCAGAA
ATCGATTACG ATAAAATCGA TAAGATTCGT GGTATGGATA TTGTTATCAC TACTACTGCG
AAGAATGATG AAGAAGGTCG TGCTTTGTTA GACGCTTTTA ACTTCCCATT CAAGAAATAA
|
|---|
| Protein sequence | MAKLHDKYQE TVVAELAKKF GYTSVMQVPR IEKITLNMGV GEAVADKKIM DHAVRDMTAI
AGQKPVVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGLSAK
AFDGRGNYAM GVREQIIFPE IDYDKIDKIR GMDIVITTTA KNDEEGRALL DAFNFPFKK
|
|---|
| |