Gene Shew185_0196 details

Gene Information

• Locus tag: Shew185_0196
• Symbol: rplC
• ID: 5369898
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 246344
• End bp: 246982
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640828393
• Product: 50S ribosomal protein L3
• Protein accession: YP_001364430
• Protein GI: 152998749
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000000133275
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTATCG GTCTTATTGG TCGTAAAGTT GGTATGACTC GCATCTTCAC TGAAGATGGT 
GTTTCAATAC CAGTTACTGT AATTGAAGTT GCAGGCAACC GTGTTACTCA AGTGAAAACT 
TTAGAAACTG ACGGCTACCG TGCACTTCAA GTTACAACTG GCACCAAAAA AGCCAATCGC 
ATCACTAAAC CAGAAGCAGG TCACTTTGCC AAGAGCGGCG TTGAAGCCGG TCGTGGTTTG 
TGGGAAATGC GTTTGGTAGA CGGTGAAGGC GAGGGCATTG AAGTTGGTGC TGAGCTAAAT 
GTTGATATTT TCGCAGACGT AGCGAAAGTA GATGTTACTG GTCAATCAAA AGGTAAAGGC 
TTCCAAGGCG GCGTTAAGCG TTGGAACTTC CGTACTCAAG ATATGACTCA CGGTAACTCT 
TTGTCGCACC GCTCGAATGG TTCTATCGGT CAGAACCAAA CGCCTGGTCG CGTATTCAAA 
GGCAAAAAAA TGTCAGGCCA TATGGGTGCC GAGCGTGTTA CTACTCAAAA TCTAGTTGTA 
GTTCGTGTAG ATGTTGAGCG TAACCTGCTA CTAGTCCGTG GCGCTGTTCC TGGCGCTACC 
AATGGCGACT TGATTATCAA GCCTGCCGTT AAAGCTTAA 

 

Protein sequence

MAIGLIGRKV GMTRIFTEDG VSIPVTVIEV AGNRVTQVKT LETDGYRALQ VTTGTKKANR 
ITKPEAGHFA KSGVEAGRGL WEMRLVDGEG EGIEVGAELN VDIFADVAKV DVTGQSKGKG 
FQGGVKRWNF RTQDMTHGNS LSHRSNGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLVV 
VRVDVERNLL LVRGAVPGAT NGDLIIKPAV KA