Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0148 |
Symbol | |
ID | 5372422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 177033 |
End bp | 177962 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640828336 |
Product | general secretion pathway protein C |
Protein accession | YP_001364382 |
Protein GI | 152998701 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3031] Type II secretory pathway, component PulC |
TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTAT TAGATAAAGT TATCGCAAAA GCCATTGGCA TGCCCCATAA ACCCCTAAGC CGGATCGTCT TCTGGTTGGG CTTTATTGTG ATCATGTTGT TAGCTGCGCA AATTACATGG AAATTAGTGC CTACTAGCTC ATCAGCCAGT GCTTGGTCCC CAACGCCCGT AAGCGTGAAT GGCAAAGGCG CCGGTCAGGT TGATCTCGCA GGTCTGCAGC AGCTTGGACT CTTTGGTAAG GCGGATGCGA ACTCTGATAG ACCTAAAGTC GAAGCGGTCG AGACTGTGAC CGATGCACCT AAGACTACAC TTTCAATTCA GCTGACTGGG GTTGTCGCAT CGACAGCGGA CCAGAAAGGC CTCGCAATTA TTGAGTCAAA CGGCAGCCAA GATACTTATA GCCTCGGCGA TAAGATCAAG GGCACATCTG CATCACTCAA AGAAGTCTAT GCCGACCGTA TTATCATCAC TAACGCTGGC CGTTACGAGA CCTTAATGCT CGATGGCTTA GTGTACACCA GCCAAAGCCC AGCCAATCAG CAGTTACAAC AAGCTAAGAG TAATAAGGCT GGCTCGGCAG TGAGCCGTGT TGATCAACGT AACAATGCCG ATATTTCCCA AGAACTCGCC GAATCCCGCA CCGAATTGTT AGCCGACCCC AGTAAGATCA CCGATTACAT TGCCATTTCA CCCGTGAGAC AGGGTGATTC TGTGGCGGGT TATCGTCTGA ATCCGGGTAA AGACGCCAAT TTGTTCAAGC AGGCGGGTTT TAAAGCCAAT GATTTAGCCA AATCGATTAA TGGATACGAC TTGACCGTAA TGAGTCAGGC GTTAGAAATG ATGAGCCAAT TATCCGAGTT AACCGAAGTA TCAATTATGG TTGAACGGGA AGGACAATTG GTTGAAATCA TGTTTAGTTT GCCGCAATAA
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Protein sequence | MDLLDKVIAK AIGMPHKPLS RIVFWLGFIV IMLLAAQITW KLVPTSSSAS AWSPTPVSVN GKGAGQVDLA GLQQLGLFGK ADANSDRPKV EAVETVTDAP KTTLSIQLTG VVASTADQKG LAIIESNGSQ DTYSLGDKIK GTSASLKEVY ADRIIITNAG RYETLMLDGL VYTSQSPANQ QLQQAKSNKA GSAVSRVDQR NNADISQELA ESRTELLADP SKITDYIAIS PVRQGDSVAG YRLNPGKDAN LFKQAGFKAN DLAKSINGYD LTVMSQALEM MSQLSELTEV SIMVEREGQL VEIMFSLPQ
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