| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0133 |
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| Symbol | |
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| ID | 5369423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 156322 |
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| End bp | 159546 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640828321 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001364367 |
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| Protein GI | 152998686 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCAG CGCTACACCA CCTCAGTTTG AAGCAAAAGC TCATTCTGTT TTCGCTTGTC
CCCTTGTTGA TGATGAGTTT TTTTATTCTG ACTCGCATGC ATGGCTTAAT AAATGAATCA
CACTCGGCCA AGCACAACCA TCTTGCGGTG CAGACGACGG TACAAATCAC TGAATTACTG
TATCAGTTGC AAAACGAATA TGGCCTGAGC ACCAATCAAC TGCCCGCCGA TAACGCGCTA
GTCGCGCAAC AACAGGCGAC CTCCAACGCA TTCAATACGT TACTTAACAG TGAACCTTTA
GCCCACCTCA GTGAGTCGCT CGATCCTAAC AGTATTGAAG CCAGTCAGAT GAACGCATTA
TTAGATGCCA TCACACTCAC GGGCCACAGA CTCGCCAACG CACGGCAAAC CCTTGCGAGC
GAAACACAAA GCCCGTTAAC TGACCGCTAT AGTCAACTGC ACACTCAGCT ATTACAGCTC
ATTCAACAAT TGCAGTTACA AACCAACGAA ATCAGCCAAT CCCGCGCCTA TACCGACTTA
TTAAACCTGC TAATGGTGCA GGAACTCGCC GTAAAAGAAC GTAGCGCAAT TAATCATTTG
CTGCTCAGCG ACTCACTCAA TCTGAATGAT TACCGCACCA TAGGCTCCTT CATGTATGAA
TATGGCCGAG CTGTGATGCA CGCGAGCAAT GCAGCGATTT CCGATAGAAA ATCGTTACTG
CAAAACCTAC AAGATTCGCC AGAGAATCAA CGTATTCTGC AGATAAGCCA ACAAATTGAG
CAGCAAACCC GCATTAGCGC ACTGGCACAG AATATTAATG CCAACTTAGG TTACGGTGGC
TTAATGGGGA GTTTTCAGGA CTATCTGCTG AAGGGCGATG ACGTTTCACT GCAAAAATTT
AATGATGCGC TGGCGAACAT TCACCTCAAC TTAGATGAAC TCAATCACGA AATTCGCTTT
CTCCCCGAAT TTAAGTCGGC GCTGAAAACC ATTGAGGACA GCGTAGATCA ATACCAATTC
AGCATGGTCA AGCTAAAGCA ACTGCGGCAG CAAGGTTTGC CGATGGCGGA AATCAACGCC
ATCGCGCAAG TCCCAGTCAG TGAGGACAAG TTAAGCCAAG CGATGACACA GCTGTTAATG
CCGCCACATC CGATTGACAG CCAAAAATGG TGGGCGCTCA CCACCCAGCG TATTGAACAA
CTGCATCAAC TCGCCAAAGG CATCACCCAG ACCATGGCGC AGCAGAGCGA GTATCAACAA
AACCAAGCCC TGACCTTCCT CGGCTTGTAC TTGTTATCAG CCCTGTTCAC CGCAACCGTT
ACACTCTGGC TCGGACAGAA GATCATTCGC AACTTTATGG ATAAAATCAC TAAGATTGCT
AATGACATGC AGCAAATGGC GGAAGATCCC AAGCTCAATA TCAATATCCG CGTCTCAGGT
ACTGATGAAC TCGCTCGCAT GGCCCGCGCC ATGAACCGGA TGATCAGCGA ACGGCAGAAG
GCGAACCATG CACTCACCCG CGCCGCTGCG GTATTTGACT ATTCTGCCGA GGGCATAATG
GTGACAGATG CCGATAACCA TATCGAACTG GTCAATCCGG CTTTCTGCAA TATTACTGGC
TATACATTGG AAGAAGTGAA AGGCCGCAGT CCATCCATCC TCAGTTCTAG CCGTCATTCG
CAGCACTTTT ACACCACCAT GTGGGAGTCG CTGCAAACGG AAGGAAAATG GGAGGGCGAG
GTTTGGAATA AGCGTAAAAA TGGCCAAGTG TATCCCGAGT ATCTAGCCAT TACAGTGGTG
CGAAATGAGC AAGGACAAAT AATCCAACAC ATTGGTTTAT TTATGGATAT CAGTAAGCGT
AAGCAATATG AGCAAGATCT TTGGTATCAA GCCAACTTCG ATGCGTTAAC GGGACTACCC
AATCGTAAGT TGTTTAATGA GCGCCTACAG CACGAAATCC ATGTGGCGCA GCATGACTCA
CGCAAACTGG CGATTCTGCT GATAGATTTA GACCAATTCA AATACATCAA CGATGTACAA
GGCCATGCCA CGGGCGACTT ATTACTTAAA GATGTGGCCA AACGCTTAGA AGGCATTGCG
GGTAAAACCG ACTTTATCAC CCGCATCGGG GGTGATGAAT TTGTACTTAT TCTGCCGCGA
CTGACCAACG AACTCGCCAT CGAACACATG GCAACGCGTA TTATCGAAAC CTTAAGCATG
CCGTTTGACT TAAATGACCG CGAGATCCAG ATTTCGGCCA GCTTTGGTAT CGGCGTCTAT
CCCGAAGATG GCCTCGATGT CAGCTCACTC ACCCGCAATA CCGAAACCGC CATGTATCAA
GCCAAAGACG CGGGACGGAA CAATTTCAAA TACTTCACCG CGGGTATGAA TCAAGCCATG
TTCGCCCGGA TGGAATTAGA GCAACGCCTG CGCCGCGCCG TGGCACAAAA TGAATTTGCC
CTGCATTATC AACCCATAGT GGATATGCAA ACTGGAGTGG TCTGCAGCGT CGAAGCCCTT
ATCCGCTGGC AAGACCCCGA CTTTGGCCTG ATCCCACCAG ATCAATTTAT CCCGCTGGCC
GAAGAAACCG GACTGATAGA ACCTATGGGC GAATGGGTGC TCAACCAAGC CATGCATGAT
CTCAGGCAGT GGCAGAAAAG TGGCTTAAAA ATCAATGTTG CGATTAATGT TTCCGGTCGC
CAATGTATCA ACACCCGTGG CATGGGATTC GACCAAGTGC TGCAGGAATG CTTTAACCGC
CACCATGTGA ACCCGCGCAA TGTGCATATT GAGATCACAG AAAGCATGCT GATGGGCGAT
GCCAGCCACT GCTTGAGCAC GCTCGAATCG ATTCGCCATC TAGGTTCGCA AATCTATATC
GATGACTTTG GTACGGGTTA TTCTTCCCTG AGTTATTTGA AAAAATTCCC GATTTCAGTG
ATTAAAATCG ATCGTAGCTT TGTGGAAAAT GCCCTCGAAA GTAACGCTAA TGCTAACTTA
GTCAAAGCTA TCGTCATGAT GGGGCAAAGT CTCGAAATGG AGTTAGTGGC CGAAGGCATA
GAAACCGAGG CCCAGTGGCA CTTCCTGCGG GATCTAGGTT GCCACTTTGC CCAAGGATAT
TTGATCTCTA AACCACTGCC CTTCGACGAG ATCACCCCCT TGCTGCACAT CAAGCACACA
ACACTGCTCA ACCACGATTA CCAAGATAGA TGCGTGAATA TCTAA
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| Protein sequence | MPSALHHLSL KQKLILFSLV PLLMMSFFIL TRMHGLINES HSAKHNHLAV QTTVQITELL
YQLQNEYGLS TNQLPADNAL VAQQQATSNA FNTLLNSEPL AHLSESLDPN SIEASQMNAL
LDAITLTGHR LANARQTLAS ETQSPLTDRY SQLHTQLLQL IQQLQLQTNE ISQSRAYTDL
LNLLMVQELA VKERSAINHL LLSDSLNLND YRTIGSFMYE YGRAVMHASN AAISDRKSLL
QNLQDSPENQ RILQISQQIE QQTRISALAQ NINANLGYGG LMGSFQDYLL KGDDVSLQKF
NDALANIHLN LDELNHEIRF LPEFKSALKT IEDSVDQYQF SMVKLKQLRQ QGLPMAEINA
IAQVPVSEDK LSQAMTQLLM PPHPIDSQKW WALTTQRIEQ LHQLAKGITQ TMAQQSEYQQ
NQALTFLGLY LLSALFTATV TLWLGQKIIR NFMDKITKIA NDMQQMAEDP KLNINIRVSG
TDELARMARA MNRMISERQK ANHALTRAAA VFDYSAEGIM VTDADNHIEL VNPAFCNITG
YTLEEVKGRS PSILSSSRHS QHFYTTMWES LQTEGKWEGE VWNKRKNGQV YPEYLAITVV
RNEQGQIIQH IGLFMDISKR KQYEQDLWYQ ANFDALTGLP NRKLFNERLQ HEIHVAQHDS
RKLAILLIDL DQFKYINDVQ GHATGDLLLK DVAKRLEGIA GKTDFITRIG GDEFVLILPR
LTNELAIEHM ATRIIETLSM PFDLNDREIQ ISASFGIGVY PEDGLDVSSL TRNTETAMYQ
AKDAGRNNFK YFTAGMNQAM FARMELEQRL RRAVAQNEFA LHYQPIVDMQ TGVVCSVEAL
IRWQDPDFGL IPPDQFIPLA EETGLIEPMG EWVLNQAMHD LRQWQKSGLK INVAINVSGR
QCINTRGMGF DQVLQECFNR HHVNPRNVHI EITESMLMGD ASHCLSTLES IRHLGSQIYI
DDFGTGYSSL SYLKKFPISV IKIDRSFVEN ALESNANANL VKAIVMMGQS LEMELVAEGI
ETEAQWHFLR DLGCHFAQGY LISKPLPFDE ITPLLHIKHT TLLNHDYQDR CVNI
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