| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0048 |
|---|
| Symbol | |
|---|
| ID | 5373469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 57335 |
|---|
| End bp | 59305 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640828237 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_001364284 |
|---|
| Protein GI | 152998603 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAAA TACAGGATTT AGTCGACCTT CAAGCCTTAT CAGAGTCAGC GGAGTTGGAA
TTTAAATTGG CTCAAGGACA AGATGGTAAA GGTAAATTAC CTGATGATTT TTGGCCAACT
TACAGCGCAA TGGCCAATTC TCGTGGTGGC TATGTTGTTC TCGGTGTGCG TGAGAAAAAA
GGACAACTGA CATTAGCTGG GATTGAAGAT ATAGAGATTG TTCACAAACA ATTGTTTGAT
ATCGCGGGAA ATAATGCCAA AGTAAACATA AACTTACTGA CAAATGATAG TGTTCAAACG
GTGAACATTG AAGGAAAATC ACTACTAGTT ATAGAAATTC CAACAGCTCG TCGTGACCAA
AAGCCTATTT ATCTGAAAAA TCAGCCTATG AAGGAGACTT ACACTCGTCT ACACGAAGGT
GATCACCGCT GTAGTGAAGA ACAGGTTAAG CGGATGATGG CAGAGCAGGT AGAAGATAGC
CGAGATGATA AAATTCTCAC TGGTTTTGAC TTCTCTGATA TCGACATGGA CAGCCTCAAA
GCATACAAGA ACTTATTTTC AGTTGCTAAA CCGCAACATC CTTGGCTGGA ATTAGACCTT
TTTGAACTGT TTAAAAAGCT GGGTGGATGG AGAAAAGATC GTCAGACGAA CGTTGAAGGT
ATAACGTTAG CTGGAGTATT GATGTTTGGT ACTTGGGATG CCATACAAGA CGCTGTTCCG
AATTATTTTG TTGACTATCG CGAACGAGAT GAAGCCAGTG TTGAGCGTTG GGTGGACCGC
CTTTACCCCG ATGGATCTTG GTCTGGAAAC GTGTTTGATT TCTATCGTCG TACATACCGG
AAATTGGTCA CGGACTTAAA AGTACCATTT GAACTTCAAA ATGGTATTCG CTTGGATGAT
TCAAAAGCCC ACGAAGCTAT TCGTGAAGCA TTAGTGAATA CGCTTGTTCA TGCAGATTAC
ACAGGACGAA GCTCAATCCT TATCGTAAAG CGGCCTGATT TATTTGGTTT TCGCAACCCA
GGGTTGATGC GTGTCCCCCC AGAAATAGCA GTAAAAGGTG GTGAAAGCGA TTGTAGAAAC
CGCAGGATGC ATCAAATGTT TCTGATGATT GGTGCGGGAG AGCGTGCTGG TTCAGGAATT
CCCAAAATAT ATAGTGGATG GGAATGGGCA AAGTGGCGAA CCCCGAAGTT GTACGAAAAA
TATGAACCGT CAGAGCAAAC CCTCTTAGAG TTATCAACCG CAAGCCTTAT CCCAGAAGAA
GTAACTCAGT TGTTAGCGGT TAAGTTTGGC AACACCACCT TTTATTCACT CAACGAACTT
GAGCAGATGA TTGTTGTAAC CGCAGCAATT GAAGGCTGGG TAAACCACGA ACGAGCTTGT
CAGCTAACCA GTAAGCATTC TCGTGATGTT ACGCTGGCTT TACCTCGACT AGTCGATAAG
GGCTTTCTTG TCGCAAGTGG AAAGAAAAGA GATAAGTCAT ACAGCTTACC AGGAATGGAG
TTGCCATCCC CAGAGGAAGT TTTTTCTAAT GCGTTAACTC CTATAAATAA CTTAACGCAT
AACGCCAGAA GCTTAACGCA TAGCATTGGT AACTTAACGC ATAACAACAG TAATGCTATT
GACTCGAACG AAACTAGAGA TGATAAAGGC AGGTTTATCA GCTCTTTAAT TGACAAACCA
TTTGTCGATA GCCTTGATGT GTTAAGCGAA TCATTTCGAC AAGAACTTAA CGCTTTAGCT
GCTCCTGCAA GAGAACAGCG TCGATTAGAT ACAGTTACGA TGAAGTCACT GATTTCTGGC
CTCTGCCAAG AACATTACAT CTCTGTTTCT ATTTTGGAAA TGATATTAGA TCGTAAGCCT
CAGAGCTTAC GACAAAATTA CTTGAAGCCT ATGATTTCAG AAGGGTTGCT AAAAATGGCG
TTTCCTCATA AGCCTAATTC CCCAAAGCAG GGGTATACCA CGGCGGACTA A
|
|---|
| Protein sequence | MFQIQDLVDL QALSESAELE FKLAQGQDGK GKLPDDFWPT YSAMANSRGG YVVLGVREKK
GQLTLAGIED IEIVHKQLFD IAGNNAKVNI NLLTNDSVQT VNIEGKSLLV IEIPTARRDQ
KPIYLKNQPM KETYTRLHEG DHRCSEEQVK RMMAEQVEDS RDDKILTGFD FSDIDMDSLK
AYKNLFSVAK PQHPWLELDL FELFKKLGGW RKDRQTNVEG ITLAGVLMFG TWDAIQDAVP
NYFVDYRERD EASVERWVDR LYPDGSWSGN VFDFYRRTYR KLVTDLKVPF ELQNGIRLDD
SKAHEAIREA LVNTLVHADY TGRSSILIVK RPDLFGFRNP GLMRVPPEIA VKGGESDCRN
RRMHQMFLMI GAGERAGSGI PKIYSGWEWA KWRTPKLYEK YEPSEQTLLE LSTASLIPEE
VTQLLAVKFG NTTFYSLNEL EQMIVVTAAI EGWVNHERAC QLTSKHSRDV TLALPRLVDK
GFLVASGKKR DKSYSLPGME LPSPEEVFSN ALTPINNLTH NARSLTHSIG NLTHNNSNAI
DSNETRDDKG RFISSLIDKP FVDSLDVLSE SFRQELNALA APAREQRRLD TVTMKSLISG
LCQEHYISVS ILEMILDRKP QSLRQNYLKP MISEGLLKMA FPHKPNSPKQ GYTTAD
|
|---|
| |