| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0039 |
|---|
| Symbol | |
|---|
| ID | 5371850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 48224 |
|---|
| End bp | 48679 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640828228 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_001364275 |
|---|
| Protein GI | 152998594 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAA CTCGTTATAC CGATTTTGGC GTTCGTACCT TGATGTATTT GGCGGTTCAG
CCAGACAGAA CCACTTTATT TAGAATTGCT GAAATTACTC AGGTATTTGA TCTGTCTCCA
AATCATGTCT CTAAGATAGT GCATCATTTA GGCAAGATGG GTTACCTCGA AACCATTCGC
GGTAAGATGG GCGGTTTCCG TTTGGGTAAG CCTGCGAGTG AGATTAACTT AGGTCAGTTA
GTTCGGGTAT TAGAAAACTC GTTGGCGCCG ATTGATTGCA GCAAACCTTA CTGCCGATTC
ACGCCTGCCT GTAAGCTGAA AGGCGTGTTA GCACAAGCAG TTGAAGCGTA TTTGAATGTG
CTCGATCAAT ATACTCTGCT GGACATTGTG AGTAATCGTG ATGAGTTACT TGCTTTGTTG
CCTGACATGT CTATCTCAGT GTTACAGTTG GATTAG
|
|---|
| Protein sequence | MQLTRYTDFG VRTLMYLAVQ PDRTTLFRIA EITQVFDLSP NHVSKIVHHL GKMGYLETIR
GKMGGFRLGK PASEINLGQL VRVLENSLAP IDCSKPYCRF TPACKLKGVL AQAVEAYLNV
LDQYTLLDIV SNRDELLALL PDMSISVLQL D
|
|---|
| |