| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_28460 |
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| Symbol | |
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| ID | 8396734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 3154241 |
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| End bp | 3155194 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644987584 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_003145181 |
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| Protein GI | 257065509 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.289482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00300353 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGATACT CAGGAAATCC TTCTGAATAC AATGTCGCCG TTCTGTGTGG CGGCAAGAGT
GGCGAACGCG AAGTTTCGCT CAACTCTGGC AAAGCGTGCG CCGAAGCCCT GGAAGCATCG
GGTTTCGAGG TCACGCTGCT GGATACGGCA GAAAAGGCAG ATTTGAAGCG CTTGATCGAC
GAGCCTTTTG ACGTTGCGTT CCTGGCACTT CATGGTCGCG GTGGGGAAGA CGGAACCATC
CAGGGATTCC TGGAGACCGT TGGTATCCCG TATACAGGAT CTGGAATCAA TGCCAGTTCG
GTTGCCATCA ACAAATCCAA GGCGAAGGAC GCCTACGCAC AGGCTGGTCT GCGAGTTGCA
GCTTCGATGA CCATCAGCGA AGACGATATT CTGGATGAGA ATTTGATTTC GGATATTGTC
GAGACCTGCG GAATCCCGTG CGTTGTCAAG CCGACCACCG AAGGCAGCTC GCTTGGTATG
ACCATCGTGC GTGATGCGGC CGACATTGCA GAAGCCATCA AGACGGCGTT GGCTGTGGAT
GTCGAAGCTA TGGTGGAGCA GTTCATCAGC GGTACTGAGT TGACCGTTGG CGTTATTGGC
AACGACGATG CTGAGGCACT ACCTGTTATT CAAATTGTCC CGACCGAGGA CGAGTTCTAT
AACTACCATG CCAAGTATGC TGCCGGCGGA AGCCGTCACC TGTGTCCGGC TCCGGTTTCG
CGCGATGTGA CGGAGAACGC TCAGGAGATG GCTGTTGCGG CGCATATGGT GCTCGGTTGC
CGTGGTGTGT CCAGGACAGA CATCATTGTC GACGCCGATG ACACCTGTTG GGTGCTTGAA
ACCAATACGA TTCCTGGTAT GACGGGCACG TCGTTGGTTC CGGATGCAGC AAAGGTTGCA
GGTATGGATT TCCAACAACT CTGCGAAAAG CTGATTGCAT TGGCTCTTGA GTAA
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| Protein sequence | MGYSGNPSEY NVAVLCGGKS GEREVSLNSG KACAEALEAS GFEVTLLDTA EKADLKRLID
EPFDVAFLAL HGRGGEDGTI QGFLETVGIP YTGSGINASS VAINKSKAKD AYAQAGLRVA
ASMTISEDDI LDENLISDIV ETCGIPCVVK PTTEGSSLGM TIVRDAADIA EAIKTALAVD
VEAMVEQFIS GTELTVGVIG NDDAEALPVI QIVPTEDEFY NYHAKYAAGG SRHLCPAPVS
RDVTENAQEM AVAAHMVLGC RGVSRTDIIV DADDTCWVLE TNTIPGMTGT SLVPDAAKVA
GMDFQQLCEK LIALALE
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