Gene Shel_28000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_28000 
Symbol 
ID8396688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp3099478 
End bp3100794 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content61% 
IMG OID644987539 
Productparvulin-like peptidyl-prolyl isomerase 
Protein accessionYP_003145140 
Protein GI257065468 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCTA CTCGTATCAT CAAACCGATG GCCGTGTTCG CCATCGCCTG CGCCATGGCC 
GCCATGATTG CGGGCTGCTC CGGCAACCAG GAAGAGGCGA CGTACGATCA GCTCGACGTG
TCCGACACCA CCGGCGGCGT GGCCGCTACG GTCAACGGCG TCGAAATCGG CGAGAATTCC
ATCACCGGTT ACATCGAGGA CTTCCGCTCG CTGAACGGCC TGACCGAAGA CGCAGCTTGG
GCCGAATGGA TGGTCAATGC CGGCTACACC GCCGAGGATC TTCGTAGCGA AGTCATCAAC
TACTACGTTA ATCAGACGCT CGTTCGCCAG GCTGCCGAGG AGAACGGCGT GACGGTCGAT
TCTGCGGAAA TCGATTCGCA GGTCGAAACC ATGAAGAGCA ACTACGAGGA CGAAGCCGCC
TGGGATGAGG CGCTGCAGTC CGTTGGTATC CAGAGCGAAG AGGTGTACCG CTCTGAACTG
GAGCTTTACG CCATGGAGCA GGCGCTTGTT CCCATCGTGG CAGGCGACGC CGAGCCCTCT
GAAGAGGATC TGCTCATGTA CGCGCAGATG TACGGCCCTG CCTATGACGG CGCCAAGAAG
TCCAGCCACA TCTTGTTCGC AGCTGACGAC GAAGCCACCG CGCAGCAGGT GCTCGACCAG
ATCAACAACG GCGAGATCGA CTTCGCCGAT GCTGCTGCGC AATACTCCAT CGACACCGCA
TCTGCAGCTG ATGGCGGCAA CGTGGGCTGG GACGCCTTGA ACAGCTTCGT GACCGAATAC
ACCGATGCCC TTTCTAATCT TGAAGAAGGC CAGGTCAGCG GTCTTGTCAC CTCCGACTAC
GGCATTCATA TCATCAAGTG CACCGAGGTC TTCACCTGCC CCGAAGAGGT CACCTCCATC
GAAGAGCTGC CCCAGGAGCT GCAGGACCTG ATCATGGACT ACGTTTCTTC CAGCGCTCAG
GACATGGCAT ACCAGGAATG GTTCTCCTCT TATCAGGAGG GCGCCGACAT CGTGATTAAC
GACATGCCCG AGGGTCTGCC CTACGACGTC GACACCTCTG AGGCCGAGGC CGCCATGGCC
GCCAGCGATA CCGGTGCCGA AAGCGCCGAT ACCGCCACCG AAGAGGCTCC TTCCGATGGT
GCCGCGGCTG ACGAATCCGC TGATGACGTT GATGCCGCTA TCGAGGAAAC CGTGAACGGC
GCGGCTGCCG AAGAGTCCGG CGATCCTTCC GCGAGCACGG TTGACGAAAC CGCCGAAGGC
AGCCCGGCCG ATCAGCCTGC CGAAGAGGAG ACCGCTGACG CTCCCACCGC GAACTAG
 
Protein sequence
MSATRIIKPM AVFAIACAMA AMIAGCSGNQ EEATYDQLDV SDTTGGVAAT VNGVEIGENS 
ITGYIEDFRS LNGLTEDAAW AEWMVNAGYT AEDLRSEVIN YYVNQTLVRQ AAEENGVTVD
SAEIDSQVET MKSNYEDEAA WDEALQSVGI QSEEVYRSEL ELYAMEQALV PIVAGDAEPS
EEDLLMYAQM YGPAYDGAKK SSHILFAADD EATAQQVLDQ INNGEIDFAD AAAQYSIDTA
SAADGGNVGW DALNSFVTEY TDALSNLEEG QVSGLVTSDY GIHIIKCTEV FTCPEEVTSI
EELPQELQDL IMDYVSSSAQ DMAYQEWFSS YQEGADIVIN DMPEGLPYDV DTSEAEAAMA
ASDTGAESAD TATEEAPSDG AAADESADDV DAAIEETVNG AAAEESGDPS ASTVDETAEG
SPADQPAEEE TADAPTAN