Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_27860 |
Symbol | |
ID | 8396674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 3087907 |
End bp | 3089169 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644987525 |
Product | DNA repair exonuclease |
Protein accession | YP_003145128 |
Protein GI | 257065456 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.369857 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGAGA AGATCACATT CATCCATTCC GGCGACCTGC ATTTGGGGGC GCCTTTCCGC GGTCTGCGGG CCCTGTCGGA CCGGTGGGCC GACCGTCTGG TGGATGCGAT CCCCGAAGCC TACGACCGCC TGATCGAGAC CTGCATCAGG CGAAAGGTCG ATTTCCTGCT GCTTGCCGGC GACGAGTTCG ACACCGACAA GCCCAGCTAT GCGCACCAGC TGCATTTCAT ACACGGGTTG CAACGCCTGC AAAGCGCCGG CATTCCCGTC TACATCGTGG CGGGCAACCA CGACCCCTAT GCCAACTGGC AACAGATTCT GCCGTCGTTG CCCGACAACG CCCAGCTCAT GCCTTCGTCC GAACCTGGAT TCGCCGTTTT CCGTCGCGAC GGAAAGCCTG CGGCCATCAT CGCGGCCCGC GGCTTCACGA ACCTGAGCGT GGGGGAAAGC ATCGCCGAAG GCATCGGCCG CCAGGAGGCA TTCGAAGCAA CCGGCGTCGA GGCGCCCTTT GTGGTGGGCA TGCTGCACAC GGGTCTGTGG ATGGACCCCT ACAAGGCCCC CACCAGCGAA GAAGCGCTGC TTGGCAGCGG CATCGACTAC TGGGCGCTGG GACACATACA CATGCGCTAC TCGAAGCCGG AGGACCATCC GAAGCTGGCG TTTTGCGGCG ACATCCAAGG GCGCGACATC CACGAGACCG GCGACCGGGG GTGCCTGTTG GTCACTCTGG AGGAAGGCAT GCCCAACCAG GTGGAATTCA TCTCCACGGC GTCGGTGCAA TGGGAGATTC TCGAGGTGGA CATCTCCGAA TGCGCGGGTG CGGCCAGCAT CGTGTCCGCC TGTGTGCGCG CCATGTTCGA CGCCAACGCG GACGCCAAAT GCGAGGAGAT GGTGGCACGC ATCACGTTGA CGGGCACCAC GCCGCTCCAT GGCTACCTGC GCAAGCCCGG TGCCTTGGAG GACCTTCGCA ACGATTTGAA CGCGAGCTAT CCGACGTTTT TCTGCGACGC GTTGCTGGAT GGCACGAAGG CGCCGCTGGA CAAGGACGCA CTTCGCGACG AGGGGCTGTT TCCGGCGTCG CTTCTGAATG TGTCCGAGGG CATGACGGCA GACAGCAAGG ATATTCTGGA CTATCTGACC GATGAGTTCG CCACCCGAGG CCTGAGCATG CCGCGTTTGG TGGCCCATGC CTACGAGGAG CTTATCCCCG ATGCGGAAAA CATCGCGCTT GACCTGCTGG AAGGCGAAGG TGGTGCGCAA TGA
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Protein sequence | MAEKITFIHS GDLHLGAPFR GLRALSDRWA DRLVDAIPEA YDRLIETCIR RKVDFLLLAG DEFDTDKPSY AHQLHFIHGL QRLQSAGIPV YIVAGNHDPY ANWQQILPSL PDNAQLMPSS EPGFAVFRRD GKPAAIIAAR GFTNLSVGES IAEGIGRQEA FEATGVEAPF VVGMLHTGLW MDPYKAPTSE EALLGSGIDY WALGHIHMRY SKPEDHPKLA FCGDIQGRDI HETGDRGCLL VTLEEGMPNQ VEFISTASVQ WEILEVDISE CAGAASIVSA CVRAMFDANA DAKCEEMVAR ITLTGTTPLH GYLRKPGALE DLRNDLNASY PTFFCDALLD GTKAPLDKDA LRDEGLFPAS LLNVSEGMTA DSKDILDYLT DEFATRGLSM PRLVAHAYEE LIPDAENIAL DLLEGEGGAQ
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