| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_24340 |
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| Symbol | |
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| ID | 8396322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2696127 |
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| End bp | 2698664 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644987180 |
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| Product | putative collagen-binding protein |
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| Protein accession | YP_003144791 |
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| Protein GI | 257065119 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGGG GGAGGACTTA CAAACTCATC GCCTGCGTAT GCGCATTTTC GCTCTGCCTT
ATCGGATTGG AACCTGCTTT CCAGGCGTAC GCTTACGACG AGGCGGAAAT TGTCGAAGGA
TCCACGGTCG AAATCGAATC TGACGAGGAG TCCGTGTACG CGCTGGCCGA AGCCACTGAC
ACGTTGACGG TTCCGTCTGA AGATTCGGTC GCATCCGAAT CTGAATCCGA ACTCGAATCT
GAATACGAAG ACAGCGAAGA AGACGCTGCA TCGGAAGAAT CCGAGATCGT AGACGACGAG
ACGGCAGCGG ATGACGAAGG AACCACGCTG GAATCCGAAG AAGCCGTCGA CGAAGAAGCT
GCTGTTGAAG AGGCAGCTCC TGAAGAGGAA GAGGCTCAGG CGGCAATCGA CGAGACGCCG
GTTCTGCGTG CAGCCCCTGC AAAAGCCCCT GCCAGGGCAC CGACGTCCAA CGCCCGCATG
CCGGAAGAGG GCTATACGCT GGAATACCTG GCCAATCGAG GCTACTCGCT GGTCTGCTTC
GAAAACGCGA CCATCGATCA GCACACCATG GGCGGCCTGC TGATCGGCGG CGATATGACG
CAAACGACGA GCGCTCCGGG CATTGCCGAC AGCCAGTACG TCGCCGCCCC GTCATATATA
GAAGGATATG CCCGCCCGAT TGATACCGGT GTGTTCAACG CCCGGTCGAG GCAGAATCCC
GTGCAGCCGC TGTACGTCAG CTCTCGGAAT ACGGTCAGCC CCGACGGGAA GATGCTGAAC
GGAGTCGGCA ATAGCGTTTC CGGAGAGGGT TACAACTACC ACGGCCAAGT CGTCGTCAAC
GACGGCTACG TGGATTGGGC CAAGATGGAG AAGGCCGCGA CCTCGCTGTC CAGGCAGCTG
AAAGACGTGA GCTCCGTTAC GCTCAACGAG TTTCAGGACT GGAGCGAAGT GCCGATCGAT
GCCGGCACAA GCGTCACGTT CGAAAACACA GGCGCCAAGC ATGTCAAAGT GAACGTTAAG
GGATCGAGCA AGAAGTTCAC TGTCATCAAT ATCCTCGACA GCGGAACCGT GTACGCTCCG
CAGGTCATTT CATACAATGG CAGGCAGCTC AGCACCGCAG AGGATGGGGA GGATATGCCC
ATCATCCTCA ACTTCCCCAA TGCCACCAAG GTCGTCATAG GCGACCAGAC TCCCGAGCAG
GGGCATATCA TAGCCCCTAA TGCCTACGTC GAAATCAATG GCGGCAACTA CAACGGTACG
ATTATTTGCA AGAGCGCGAA GCTGAGCGGC CAGGGCCATG TCCGTCGGTT CCATGGCGAC
TATCCCGGTC CTGCGCTACA GCCTGTATGG ATAAGCAAGG CAGACTCCCA GGAAACGCCG
CTTGCCGGTG CCACGCTGGA GATTGTCGAC AAGAACGGCG AAGTGGTGGA TTCCTTCGTC
ACGACCGACG AGCCCTACGG GTTGAAGGTT CTTCCCGGCA CGTACACGCT TCGCGAAAAA
GACGTGCCTG CCGGCTACCA GAAGGCAGAA GACATCGCGT TCGAAGTGAG TGACAAAGGC
GTCATAACCG TTGACGGCGT TCAGGTTGCA GACAAAACCG TCACCATGAC CGACGAATTC
AACCCGGTCA CAGCAAATCT GCAGGCGCAT AAGACGCTCA AGGGCGGCCA GCTGAAGGGC
GACGACTTCC AGTTCGTGCT GAAGGACCAA GCCGGCGAAG AAGTCGAAAC CGTGAAGAAC
GACGCGCAAG GTTTCGTGCA GTTCTCGCCC ATGACTTTTG ACGAGCCGGG CACGTGGACC
TATACGATTT CGGAAGTCGA TGGATCCTTC ACCGACGCGG CTGATTGCGG AGGCATGGCG
TACGACGCGA ACGTGTACAC CGCTGTGGTC GACGTGGCCA AGGGTGAAAA CGGCCTCGAG
GCGAACGTTA CCTATAAGGA CGCTTCGGGC AACCCGGTTG CAGTGGGTGA CGCAAACAGC
GACGGTGCCC CGGTCTTCGT GAACGTGCAG GTCCAGAGCT TGGAACTGCA TAAAGTCGAT
GGAACAGACC GCCCGTTCCC CTCTGATCTG AACGCTCTGG TTGCCTTCGA TGTTTCTTAC
ACGTCGCCTG AAGGTGCCAC CGAAGTGGTT CAAAGCGGCA TCCATCCCGA TGCGCAGGGC
ATCGTGAAAT TCTCGAATCT GAAGCCCGGA ACGTACACGA TTACGGAAAC CGACGCTCCC
GACAGCTACA TCAAGCTTGA AGAGCCGATT GTGGTGACCG TGACCTCGGA GGGTGCCATC
GAGTTGACAT CCGCTCAGGA GAACGTGGTT TCGCTGGTGG ACGCCGTCAA TGCGGACAGC
ACGGCGCAGG CCGCGCCTGG CAAGGTTTTG ATGGTCCGCA ACTATCCTTA CATCGTCATG
CCCGAAACGG GCCTTTCGAA TCGGTTGGTA TTCCAAACCC TGGGAGCCAT CGCGATGCTC
GTCGGAGCTT GCCTGTATGC AACGACCCGT CGACGAGCGC GCGGCTCCAG CCCGAAGGGG
GGATGCGATG GGATCTAG
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| Protein sequence | MFRGRTYKLI ACVCAFSLCL IGLEPAFQAY AYDEAEIVEG STVEIESDEE SVYALAEATD
TLTVPSEDSV ASESESELES EYEDSEEDAA SEESEIVDDE TAADDEGTTL ESEEAVDEEA
AVEEAAPEEE EAQAAIDETP VLRAAPAKAP ARAPTSNARM PEEGYTLEYL ANRGYSLVCF
ENATIDQHTM GGLLIGGDMT QTTSAPGIAD SQYVAAPSYI EGYARPIDTG VFNARSRQNP
VQPLYVSSRN TVSPDGKMLN GVGNSVSGEG YNYHGQVVVN DGYVDWAKME KAATSLSRQL
KDVSSVTLNE FQDWSEVPID AGTSVTFENT GAKHVKVNVK GSSKKFTVIN ILDSGTVYAP
QVISYNGRQL STAEDGEDMP IILNFPNATK VVIGDQTPEQ GHIIAPNAYV EINGGNYNGT
IICKSAKLSG QGHVRRFHGD YPGPALQPVW ISKADSQETP LAGATLEIVD KNGEVVDSFV
TTDEPYGLKV LPGTYTLREK DVPAGYQKAE DIAFEVSDKG VITVDGVQVA DKTVTMTDEF
NPVTANLQAH KTLKGGQLKG DDFQFVLKDQ AGEEVETVKN DAQGFVQFSP MTFDEPGTWT
YTISEVDGSF TDAADCGGMA YDANVYTAVV DVAKGENGLE ANVTYKDASG NPVAVGDANS
DGAPVFVNVQ VQSLELHKVD GTDRPFPSDL NALVAFDVSY TSPEGATEVV QSGIHPDAQG
IVKFSNLKPG TYTITETDAP DSYIKLEEPI VVTVTSEGAI ELTSAQENVV SLVDAVNADS
TAQAAPGKVL MVRNYPYIVM PETGLSNRLV FQTLGAIAML VGACLYATTR RRARGSSPKG
GCDGI
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