Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_23660 |
Symbol | |
ID | 8396255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2620434 |
End bp | 2621819 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644987113 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003144724 |
Protein GI | 257065052 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.629317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.503051 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGATGG AAAGGGGCGA CATCGTGACG GCAGTGTTTC GCGAAGGCCG CGCATGGGTG TATGCGATGT TTGCCGCCAT CGTGTTGTCC GCATCGTTGG GCGGACTGTC CCAAACGGGC CTGAACGCTA TGCTGTCCCA GGTCTGTTCC GAGTTCGGGA TATCGACCGG AGTGGGGCAG TGGCTCGCCA CCATCTATAT GTTCGTCATC GGCGCCATCG TGCCGCTCTC GTCGTTTTTC ATGGGGCGTT TCCGCACCAA AGACCTGGTG CTGCTTTCGG CGGGGCTGTT CATCGGCGGC GCGTTGCTGG CTGCGTGCGC GCCCAACTTC TGGATGCTGC TGTTCGCCCG CATCATGCAG GCCTGCGCCA CAGGTCTGCT CATGCCGCTC ACCCAGACCT TCTCCATGAC CCGGTTTCCA GAGGGGCGCA AGGCCACGGC TATGGGCATC TCCGGCATCG CCATGGGTTT CGCGCCGAAC ATCGGGCCCA CCATCGGCGG TTCCATGGTC GACGCTTTCG GTTGGCGAAG CTTCTTCTGG ATGTTGGCGG GCATCGCACT GGCTATCGCT TTGGCCTGCG CTTTCTTGGT ACAACGCCAC GACGACGCCT CGTATCCGGC GGGCATCGAC CCGATTTCCT TCGTGCTGTG CACCACAGGG TTCGGCGGCA TACTCATGGC ATGCTCCTAC GCCTCCTCAT ACGCGGTGCT CGATCCGCAC GTCTGGGGGC CGGCGGTCGT CGGTGTTGCG ACCCTGGTGG CGTTCTTCCT TCGTCAAACC CGCATCGAGC GGCCTATGGT GGATCCGAGC ATCTTCAAGA GCCGCTCGTT CAACGCAGGA TTCGCGGCGT TGTGCCTGCT TACGGCATCG TTCATGGGCA TCACGCTGCT GGTACCGCTC TATATTCAGG GGCTGTGCGG CGGCACCGCC TTCGAGGCGG GCATCGTGCT TCTACCCGGC ACGGTGACGG CGCTTGTCAT GAATCCGCTG GCAGGCTATC TGACAGACAA GATCGGAGTG CGTCCTGTGA CCGTGGTGGC CGGATTGTTC TTGGCGACGG GCTCTGCCAT GATGGCTTTC TGCGACGCGT CCACTTCGCT CGGCGTCGTC GCCTGCATCC AGGCCATCCG GCAGATCGGT GTTTCCAGCC TTATCGGCCC GCTGACGTCG TTCAGCCTGT CGCAGCTCAA GGGTAAATGC ATCTCCGACG GCAGCGGATT CGGCTTGGCC GCGCGCCAGA CCAGCGCCTC GGTGGGTACG GCGCTCATGG TGTTCTGCCT CGAAGGGGCC GGGCTTGCCG GCGAGATGTC CTTCCACGCG GCGTTCGGTG TGAGTGCGGT CTGCGCCATC GGGTGCCTGC TCGTCATCCT GCGCCGGGTC CGATAA
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Protein sequence | MKMERGDIVT AVFREGRAWV YAMFAAIVLS ASLGGLSQTG LNAMLSQVCS EFGISTGVGQ WLATIYMFVI GAIVPLSSFF MGRFRTKDLV LLSAGLFIGG ALLAACAPNF WMLLFARIMQ ACATGLLMPL TQTFSMTRFP EGRKATAMGI SGIAMGFAPN IGPTIGGSMV DAFGWRSFFW MLAGIALAIA LACAFLVQRH DDASYPAGID PISFVLCTTG FGGILMACSY ASSYAVLDPH VWGPAVVGVA TLVAFFLRQT RIERPMVDPS IFKSRSFNAG FAALCLLTAS FMGITLLVPL YIQGLCGGTA FEAGIVLLPG TVTALVMNPL AGYLTDKIGV RPVTVVAGLF LATGSAMMAF CDASTSLGVV ACIQAIRQIG VSSLIGPLTS FSLSQLKGKC ISDGSGFGLA ARQTSASVGT ALMVFCLEGA GLAGEMSFHA AFGVSAVCAI GCLLVILRRV R
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