Gene Shel_22180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_22180 
Symbol 
ID8396107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2454883 
End bp2456181 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content60% 
IMG OID644986966 
ProductDNA repair nucleotidyltransferase/DNA polymerase 
Protein accessionYP_003144577 
Protein GI257064905 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000141857 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0200421 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGAAC GCGTTGTTCT GCACGTTGAT ATGAACGCGT TCTATGCGTC GGTCGAGCAG 
CATAAAAATC CATCCCTCAG AGGCCGGCCC ATAGCGGTCG CAGGCAATCC AGAGCGCCGC
AACGGCATCA TCCTTGCGAA AAGCCGCGAG GCGAAAGCGT GCGGGGTCAA AACGGCCGAG
GCCTTATGGC AGGCGAAGGA GAAATGCCCG GATATCATCT TCGTACCGCC TGATTACCGA
TCCTACCTGC GGTATTCTCG CTTCGCCAGG CAGATTTACT ACCAATATTC CGACCAGGTC
GAACCTTTCG GATTGGATGA AAGCTGGATC GAGCTCACCC ATACGCTGCA CCTCCATGGC
GGAGATGCCA TGCTCGTTGC GGAAGAAATC AGCGAACGCA TCAAAGCGGA GCTGGGGCTT
ACCGTATCGG TAGGTGTGTC GTTCAACAAA GTGTTCGCCA AGTTCGGAAG CGACACCGAT
CCGGGCGACG GCATCATGCG TATAACTCCG CGCAACTTTC GAAGCATCGT ATGGCCGCAC
CCGGTCGATG AGCTCATCTA CGTAGGGCGC GCCACCAAAT CGAAGCTGAA CTCCTCTGCG
GTATTCACCA TCGGGGATCT GGCCTGCGCC TCCGACACGC TGCTGCAGCG GCGGCTTGGC
AAGATGGGCG GCATCATCAA GATGTTCGCA AATGGCCAGG ACATAAGCCC CGTCAAGGTT
ATGGATCCCG CGAAAGCCGA TGCGGACTAT GCCATCAAAT CCATTGGCAA CGGACTCACG
GCACCGCACG ACCTCGTGAC CGAACGAGAG GCGAAAGCCC TCATATACTT GCTATCCGAA
TCGGTTGCGC AGCGGCTGAG GGAATGCCGG ATGCGGGCGC GCACCATCGC CATCAGCGTC
AGAGGGCATG ACCTGCTGGG CTACACGCGG CAGGCGCCGC TGCCTGCTCC CAGCAACATC
ACCGAAGAGC TTTCCCGCGC GGCGTTCGCC CTGCTTCGAG CGAACGAACC CCTCGACCGT
ATCCATCCCG TGAGGGCCTT GGGCGTGCGG GCGTGCAACC TGGTTTCGGC CGACCTTCCT
GTACAGGAAG ACCTGTTCGG CGATGTGGCG GCCCGGGAAT CGCTTGAGCG GTTAGACGCC
ACCATCGACG ACCTGCGACG GCGTTTCGGA AACGGATGCG TGAAACGCAT GGTGGAGCTT
TCGGACGAAG CCATGGCTGG CCTCGATATC AAACGGGACA ACATCATCCA CCCCGTCGGG
TTCTTCGCGC CCGACGCCCA TAGCAGGAGC GCCTCATGA
 
Protein sequence
MTERVVLHVD MNAFYASVEQ HKNPSLRGRP IAVAGNPERR NGIILAKSRE AKACGVKTAE 
ALWQAKEKCP DIIFVPPDYR SYLRYSRFAR QIYYQYSDQV EPFGLDESWI ELTHTLHLHG
GDAMLVAEEI SERIKAELGL TVSVGVSFNK VFAKFGSDTD PGDGIMRITP RNFRSIVWPH
PVDELIYVGR ATKSKLNSSA VFTIGDLACA SDTLLQRRLG KMGGIIKMFA NGQDISPVKV
MDPAKADADY AIKSIGNGLT APHDLVTERE AKALIYLLSE SVAQRLRECR MRARTIAISV
RGHDLLGYTR QAPLPAPSNI TEELSRAAFA LLRANEPLDR IHPVRALGVR ACNLVSADLP
VQEDLFGDVA ARESLERLDA TIDDLRRRFG NGCVKRMVEL SDEAMAGLDI KRDNIIHPVG
FFAPDAHSRS AS