Gene Shel_21990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_21990 
Symbol 
ID8396088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2438828 
End bp2439265 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content55% 
IMG OID644986947 
ProductLSU ribosomal protein L13P 
Protein accessionYP_003144558 
Protein GI257064886 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0102] Ribosomal protein L13 
TIGRFAM ID[TIGR01066] ribosomal protein L13, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000237961 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00551635 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAAACGT ATTACGCAAA GCCGAGTGAG GTTGAGCGCG AGTGGTTCGT CATCGACGCC 
ACCGACCAGG TTCTGGGTCG CGTTGCTGCT AAGGCTGCCA TGATTCTCAA GGGCAAGCAC
AAGCCGACGT ATACCCCGCA TATCGACACC GGCGACTTTG TCATCATCGT GAATGCTGAC
AAGATCAAGG TGACCGGTAC CAAGGCCGCT AACAAGGAAT ACTATCGTCA TTCCGGCCAT
CCGGGCGGAC TGAAGAAGGA AACCTTCACC GAGGCCATGG AGAAGCATCC TGAGCGCGTT
ATCGAGCATG CCGTCAAGGG CATGCTGCCC AAGAACACTC TGGGCCGCAA GCAGGGTTTG
AAGCTGAAGG TGTACGTTGG TCCTGATCAT CCGCATCAGG CTCAGAAGCC CCGTGAGATC
AAGATTGAGG AGTTGTAA
 
Protein sequence
MKTYYAKPSE VEREWFVIDA TDQVLGRVAA KAAMILKGKH KPTYTPHIDT GDFVIIVNAD 
KIKVTGTKAA NKEYYRHSGH PGGLKKETFT EAMEKHPERV IEHAVKGMLP KNTLGRKQGL
KLKVYVGPDH PHQAQKPREI KIEEL