| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_21240 |
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| Symbol | |
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| ID | 8396013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2357956 |
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| End bp | 2359566 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644986872 |
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| Product | multidrug resistance efflux pump |
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| Protein accession | YP_003144483 |
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| Protein GI | 257064811 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTCC AACGGAAGCA GTCTGCCATC AACATTCCCA CGGCAGGTGA GAACCCCAAT
GTGGTTCCTC CCGCGCCTTT GCAGGGCATT CCCAATACCG TACCTGCATC GCCTGACGAA
CAGTCTTCTC CTACTTCAGA TGAAATCGAA GGACTGAGCG CCTATCAGAC GCTTGAACGC
CGCCGCAAGA AGAAGCGCCG CAAGCGCATC ATTCGTGGCG CTGCAGTTGC TGCGGTTCTT
GCCGTGGGCG TAGGCGGGTA CGCCCTCTGG AACAACGCGA ACAACGTGGA TGCTCTTCCT
GAGGCGGAAT ACGGATACGT CGAGCAGGGG ACTTTCGAAG CCAATGTGTC TGCATCTGGG
TCGACGCAGC CCGCTTCCTC AGTCGTGGTC ACGCCGGAGG TTGACGGCAT CATTACCGAC
GTGCAGGTTG CCGAAGGCGA CCAGGTGGAA GAAGGCGACG TCCTCTTCTA CATCAAGAAC
GATTCCCTGG ACAAAGCGGT AACGGAGGCC AACCAGCAGG TCAAGACCGC GCAAAACGGC
GTGACCTCTG CTGAGCTGGC CTTGAAGAAC GCGAAGAAGG CCTTGTCCGA CGCCAACAGC
GGCATCAACG GATTGGCTTC GGCGAAGGTT CAGCGGCCGT ACGGTGCCGC CGAATTCAGC
TGGGCTACGT ACAGGCCCCA TGAGGCGGCT ACGGTGAGGA CCGACTACAT CAACGGTCCC
GAAGACGACA CATCGCCCGA TGGCGCCGCA TATGCCGATG CCGGCGACTA CGGCGAGTAT
GCCGATTACG GCGACTATGG CGGATCGGGG GATTCCGACG CCTACGCCGT TCAGCAACCG
AGCGTATCGA CAGAAGAGCT GCAGCTGGCT GTGGACAATG CCCAGATCGA GCTCGACAAC
GCCAACATCG CCCTCCAATC CGCAAAGGAC GCATACGACC AGGCCGTCGC CACCGCTGAG
AAGCGCACGG TGAAGGCGCC CAAGTCGGGA ACGATCATCG CCATGTCCGC CGAAGAAGGC
GCCGCCATCG GTCAGGCCGA AGGCGGAACG TCACAGGCGA CGGGCTCGCT TGTGACCATC
GCCGACCTTG AGTCGTTGCA GGTGACCGTT CAAGTGAACG AAGTCGATGT CAACAACGTG
CAAGAGGGCC AGCAGGCAAA GGTCACCTTT GCGGCGTTGC CGGACGTGGA GCTGGATGCA
GAGGTGCGCC ACATTGCCAC GTTGGCTTCC GGAAACCCCG GCGAAGGCGA GTCCTACCAG
CCGGGCGGCA TCGTCACCTA TGCGGTCGAA CTGGTTATTC CCGAACCCGA CGAACGGGTG
AAACCCGGCA TGACCGCCAG CGTGAAGATT GTCTCGCAAA GCCTGGAGGA TGTGCTCATG
GTGCCGACAT CGGCGCTTAT CGACAATGGC GACGGGACGT TCGACGTGCA AGTGGTCACG
GGCACCGATG ACGCCGGCGG CGATTTGGTC GAGCTCCGCA CTGTGGAGGT GCAGGCTCAG
GATGCCGCCA CAGCCGTGGT GACCGGCGAT GTCCAGGCGG ACGACACGCT GCTCATACCG
AGCTTCGAAG GCGAAATGCT CGAAGACGAC GGCGCGATGA TGGGATACTA G
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| Protein sequence | MLFQRKQSAI NIPTAGENPN VVPPAPLQGI PNTVPASPDE QSSPTSDEIE GLSAYQTLER
RRKKKRRKRI IRGAAVAAVL AVGVGGYALW NNANNVDALP EAEYGYVEQG TFEANVSASG
STQPASSVVV TPEVDGIITD VQVAEGDQVE EGDVLFYIKN DSLDKAVTEA NQQVKTAQNG
VTSAELALKN AKKALSDANS GINGLASAKV QRPYGAAEFS WATYRPHEAA TVRTDYINGP
EDDTSPDGAA YADAGDYGEY ADYGDYGGSG DSDAYAVQQP SVSTEELQLA VDNAQIELDN
ANIALQSAKD AYDQAVATAE KRTVKAPKSG TIIAMSAEEG AAIGQAEGGT SQATGSLVTI
ADLESLQVTV QVNEVDVNNV QEGQQAKVTF AALPDVELDA EVRHIATLAS GNPGEGESYQ
PGGIVTYAVE LVIPEPDERV KPGMTASVKI VSQSLEDVLM VPTSALIDNG DGTFDVQVVT
GTDDAGGDLV ELRTVEVQAQ DAATAVVTGD VQADDTLLIP SFEGEMLEDD GAMMGY
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