| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_18990 |
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| Symbol | |
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| ID | 8395788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 2129285 |
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| End bp | 2133085 |
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| Gene Length | 3801 bp |
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| Protein Length | 1266 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644986650 |
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| Product | putative collagen-binding protein |
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| Protein accession | YP_003144264 |
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| Protein GI | 257064592 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.133816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGACAG CGGCTCGTGA GGCCTCCACC TCCAAGCTCT TCAGGGTCGT CATGGCGGCC
GTGCTCGCGG TATCCATGTG CATCCCCGCA ACCGCGCTGC AGGCGCAGCG CGCATTCGCG
GCCTCGGACT CGCTCTCCCA GGTCACCTGG GAGGAGGCCA AGCCGCAGAT CGAGCAGTAC
ATGGGCGTGC CCTACGTGTG GGGCGGCCGC TCGACCGACG GCTGGGACTG CTCGGGCTTC
GTGTCGTTCG TGATGCACGA CATCTACGGC ACCGACTGGC CGGGCGGCAC CTGGGGCGAC
TCGGGCACGG GCTCGATCTA CAACTACTGC GCCGACTACC AGGTGTTCTC GGGCGACTCG
GCGGAGGACT ACAACTCGGC GTTCGACAAC GGCACCGTGA AGCCCGGCGA CATCATCATC
TTCCTGAACT CGCAGGTCGT GACGGTCCAC GCCGCAATCG CAGGCGAGGA CGCCACGGTC
TACCACGCCT GGCACGAGGG CTTCGGAACC GGCAACTGCC GCTTCGACTA CATGTGGGGC
ATCAACGGCG GGCACGGCAA GGTCTACAGC TCCTTCGTCG TCTACCGCGG CCTCACCGAG
GGCGGCTACG TGACCATGGA CAAGTCGTCC GCAGACGTGA AGGTCACGGG TGGCAACGCG
CAGTACTCGC TCGCGGGGGC CGTCTTCGGC GTGTACCGCG ACGGCGCGCA GGTGGCCACC
ATCACCACCG ACGGGGACGG CCACGGCTCC ACATCCGACA AGCTCCCGAA CGGCTCCTAC
ACCGTGAGGG AGATCGAGGC GCCGGCAGGC TACGCGCTCG ACGGCCGCAC GTTCCCCGTC
ACCGTCTCCG GCTCCGACGC CGGGGCGGAG ATGGCCGAGC GGCCCGTCAC CGTCACCCTC
ACCGTCGCGA AGTTCGACGA CGGCACCGGG CGGCGTGAGG CGCAGGGCGA CGCCACGCTC
GACGGGGCGG TCTACGAGGC AAGCTACGCC TACGACGGTG GCACGAAGAC CGTCACGGGC
ACGACGAGCA ACGGCACCGT GACCTTCGAA GGCATCCCGC TCGGCGACGT CACCGTGCGC
GAGCTTGAGG CTCCCGAGGG CTACCTTCCC GACGCCGAGA AGCACACCCT GACCGTGAGC
GCCGGCATGG CCGGCCACGA CCCCGTCTTC TACTACGAGC CGGCCGACGA GTTTGCGGAG
ACCGTCTTTC GCGGCGGCAT CACCGTCGGC AAGGCCGACT CCGAGGAGTA CGACCACAGG
GACGGCGACT ACGCCAACTA CGCCCAGGGC GACGCGACCT TCGCGGGCGC CGAGTTCGCG
GTCGTGAACC GCTCCGAGGG ATCGATCTGG TACGACGCGA ACAAGGACGG GAAGCACCAG
GATTCCGAGG ACTTCGCCCC CGGCGCCGAG GTGCTTCGCA TGACCACCTC CTACGACGCG
GCCCTCGACG CCTACGTCGC AAAGACCGGC GAGAGGGCGC TGCCGTACGG CACCTACGGG
GTCGTCGAGA CCAAGTCGCC CGAGGGCTAC ACCGAGCGCG GCAAGGTCGA CGTCACCTGC
GAGATCCGCG AGGACGGCCA GGTGGTGGAA CTCACCCGAG ACTCCGGCAT CGAGAACGAG
GTGATCCGCG GCGGCGTGCA AGTGGAGAAG GACGACTGGG AGCTCGGCAA GTCCGAGGCC
ATCGGCGGCG CGGGCCACTC CGCGCTCGAC GCGCAGGGCC ACCTCGGGAC GTCGCTCGAG
GGCATCGAGT TCACGGTCAC GAACGCCTCC AGGCACGGCG TGATGCTCGA CGGCGAGTAC
GTTGGCAAGG GCGAGGTCGC GGCGACCATC TACACGTCCT GGAACGAGGA GCTCGGCGCC
TACACGGCCC AGACCGGGCC CGACGCGCTC CCGTACGGCA CCTACACCAT CATGGAGACG
GCCACGAACG ACTCATACAT GCTCACCGAC GGGAAGGCCC GCACCTTCGA GGTCCGCACC
GACGGCGAGA CCGTGACCTT CGACAAATCC GGCGCGGACC TCACGTGGCG CGACCGCGTC
GTGCGCAACG ACGTCCACCT GCAGAAGAAG GGCGCCGACG ACTCGCACAA GTTCGCCTAC
GTGCCGTTCC TCATCACCAA CGTCACCACG GGCGAGGCGC ACGTGGCAGT GACCGACCGC
AACGGGGCGC TGAACACCTC CGCCGGCTGG AACAGCCACA TCCGCGACGC TAACGCCAAC
GACTCGCTCA TCGGCAAGGA AACCATCACG GCCTCCGACG TCGACGAGTC CTGCGGCGTG
TGGTTCGGCC TTGCCGAGGA CGGCTCGGTC TCCGAGCCCG ACGACCGGTT CGGCGCGCTG
CCGTACGGCG AGTACACCAT CGAGGAGCTG CGCTGCGAGT CCAACGAGGG CTACGGCCTT
TGGAGCGACA GCTTCAACGT ATCGCGCGAC TCCACGACGA CCAAGTTCGA CGTCGACCTC
GGCACGGTCG ACGACCAGCC CGGCCCGCGC ATCGGCACGA CTGCGACCGA CGCCGCAGAC
GGCGACCACG AGGCCTACGC CGGCAAGGTC GAGATCGTCG ACACCGTCGC GTACCGCAAC
CTCGAGCCCG GACGTGAGTA CACCGTCACG GGCACGCTCA TGGACAAGGC CACGGGCGAG
TCCGTCAAGG ACGGCGGCAA AGAGGTGACC GCCAACGCGA CCTTCACCGC CAAGGACGCC
AACGGCACAG TAGACGTCAC CTTCTCGTTC GACGCGTCCG CGCTCGCCGG CCACGACGTC
GTAGCCTTCG AGACGCTCAC GCATGAGGGC CGCGAGGTCG CCGTGCACGC GGAGATCGAG
GACGAGGGCC AGACCGTGAG CATCGTCCCC AAGCCCGAAA TCGGCACCAC GGCGGTCGAC
GCCGACGACC TTGACCACGA GGCGGGGGCC GACTCCAAGG TCGAGATCCG CGACGTGGTG
GCCTACAAGG GGCTCACCCC CGGCAAGGCC TACACCCTCA CCGGCAGCCT CATGGACAAG
GAGACCGGCG AGCCCGTGCA GTCCGGAAGC AAGGACGTGA CCTCGACCGT GACGTTCACG
CCCGAAAAGG CCGACGGGTC GGCCGCGGTG ACGTTCTCGT TCGACGGCAG AGCCCTAGCG
GGCCACGACG TCGTCGCATT CGAGTCGCTT AAGTCCGGTG GCGCAGAAAT CGCCTCGCAC
ATGGACATCG AGGACGGCGG CCAAACTGTC AAGCTGGTCA AGCCCGAGGA GCCGCAGAAG
CCCGAAGAGC CCTCCATCGG CACCATGGCC ACCGACGCCG ACGACGGCGA CCACGAGGCC
GTCGCGGACG CAGAGGTGAC CATCGTCGAC GAGGTCGCCT ACAAGGGCCT CACCCCCGGG
GAGGAGTACA CCGTCACCGG CACGCTCATG GACAAGGAGA CCGGCAAAGC CGTCCAGTCG
GGCGGAAAGG ATGTGACAGC CACGGCCTCG TTCGTCCCCG ACAAGGCGTC CGGTTCCGTG
AGCCTCTCCT TCACGTTCGA CGGGAGCGCC CTCAAGGGCC ACGACATCGT AGCGTTCGAG
ACGGTCTCCA AGGACGGGGC GGAGGTCGCG GTGCATGCCG ACATCGACGA CGCCGGCCAG
ACCGTAAGCC TGGTTGAAGA GCCCGCGACG CCTTCGAGCC CGACGCCCAA GGGCAGCCTG
CCCAAGACCG GCGACGCGGT GCCCTGGATC CCGCTCGCAT GCCTGGCTGC CGCGGCGGCA
TGCGGAATCG CCATCCTCGT GTTGATGCGC AGGAAGGGCA ACTGGATCGA CGAGGACGAT
GGCGACATTA TCGAAGAGTA A
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| Protein sequence | MRTAAREAST SKLFRVVMAA VLAVSMCIPA TALQAQRAFA ASDSLSQVTW EEAKPQIEQY
MGVPYVWGGR STDGWDCSGF VSFVMHDIYG TDWPGGTWGD SGTGSIYNYC ADYQVFSGDS
AEDYNSAFDN GTVKPGDIII FLNSQVVTVH AAIAGEDATV YHAWHEGFGT GNCRFDYMWG
INGGHGKVYS SFVVYRGLTE GGYVTMDKSS ADVKVTGGNA QYSLAGAVFG VYRDGAQVAT
ITTDGDGHGS TSDKLPNGSY TVREIEAPAG YALDGRTFPV TVSGSDAGAE MAERPVTVTL
TVAKFDDGTG RREAQGDATL DGAVYEASYA YDGGTKTVTG TTSNGTVTFE GIPLGDVTVR
ELEAPEGYLP DAEKHTLTVS AGMAGHDPVF YYEPADEFAE TVFRGGITVG KADSEEYDHR
DGDYANYAQG DATFAGAEFA VVNRSEGSIW YDANKDGKHQ DSEDFAPGAE VLRMTTSYDA
ALDAYVAKTG ERALPYGTYG VVETKSPEGY TERGKVDVTC EIREDGQVVE LTRDSGIENE
VIRGGVQVEK DDWELGKSEA IGGAGHSALD AQGHLGTSLE GIEFTVTNAS RHGVMLDGEY
VGKGEVAATI YTSWNEELGA YTAQTGPDAL PYGTYTIMET ATNDSYMLTD GKARTFEVRT
DGETVTFDKS GADLTWRDRV VRNDVHLQKK GADDSHKFAY VPFLITNVTT GEAHVAVTDR
NGALNTSAGW NSHIRDANAN DSLIGKETIT ASDVDESCGV WFGLAEDGSV SEPDDRFGAL
PYGEYTIEEL RCESNEGYGL WSDSFNVSRD STTTKFDVDL GTVDDQPGPR IGTTATDAAD
GDHEAYAGKV EIVDTVAYRN LEPGREYTVT GTLMDKATGE SVKDGGKEVT ANATFTAKDA
NGTVDVTFSF DASALAGHDV VAFETLTHEG REVAVHAEIE DEGQTVSIVP KPEIGTTAVD
ADDLDHEAGA DSKVEIRDVV AYKGLTPGKA YTLTGSLMDK ETGEPVQSGS KDVTSTVTFT
PEKADGSAAV TFSFDGRALA GHDVVAFESL KSGGAEIASH MDIEDGGQTV KLVKPEEPQK
PEEPSIGTMA TDADDGDHEA VADAEVTIVD EVAYKGLTPG EEYTVTGTLM DKETGKAVQS
GGKDVTATAS FVPDKASGSV SLSFTFDGSA LKGHDIVAFE TVSKDGAEVA VHADIDDAGQ
TVSLVEEPAT PSSPTPKGSL PKTGDAVPWI PLACLAAAAA CGIAILVLMR RKGNWIDEDD
GDIIEE
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