| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_16560 |
|---|
| Symbol | |
|---|
| ID | 8395546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 1862832 |
|---|
| End bp | 1864349 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644986410 |
|---|
| Product | bifunctional HTH-domain containing protein/aminotransferase |
|---|
| Protein accession | YP_003144024 |
|---|
| Protein GI | 257064352 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0044181 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCA CGACTTTTGC GGAGCGGCTG AAGCGGTCCA TGGCTGAACA AGGCCTTAAG
CAGGCGGATT TGCTGCGATT GGCTGCGGCG GCAGAGCAAA AACTAGGGAA AAGCCAGCTC
AGCCAGTATG TGAGCGGCAA AACCATACCG CGACGCGATA CGTTGCACTT CTTGGCAGAC
GCGCTGCACG TCAATCCCGA TTGGCTGTTG AACGGCGCAG CTGCACAAAC TCAAGCCATT
GAAGCTCCCG CGCCTGTTTC TGAAATTGAA CTTTCCAAAC CTATCTCTTC GGAAGGAAGA
CCCATGCGTA CTTTCAAAAA ATCCTCCAAG CTCGATAACG TGCTGTACGA CGTCCGCGGT
CCTGTGGTCG ACGAGGCCAT GCGCATGGAG CAGGACGGCG TCAACGTGTT GAAATTGAAC
ATCGGCAACC CGGCGCCCTT CGGATTCCGC ACGCCCGACG AAGTAGTCTA CGACATGGCC
CACCAGCTTA CGGAGTGCGA AGGCTACTCC GACAGCAGGG GATTGTTCAG CGCCCGCAAG
GCCATCATGC AGTACTCGCA GATCAAGGGC CTTCCCAACG TCACTATGGA CGACATCTAC
ACAGGCAACG GCGTCAGCGA GCTTATCAAT ATATGTATGT CGGCGCTGCT GGATTCCGGA
GACGAGATTC TCATCCCGTC TCCCGACTAT CCGCTTTGGA CCGCATGCGC AACGCTGGCA
GGCGGCAAGC CCGTGCATTA CATTTGCGAC GAAGAAGCCA ACTGGTATCC CGACCTCGAC
GACATGCGCT CCAAAGTGAC CGACCGCACC AAAGCCATCG TCATCATCAA CCCGAACAAC
CCCACCGGCG TCCTCTACCC GCCGGAGATC TTGCAGGGCA TCATCGACAT CGCCCGCGAG
CATCAGCTCA TGATCTTCTC CGATGAAATC TACGACCGCC TGGTGATGGA CGGTAAGGAG
CACATCAGCA TCGCGTCCAT GTGCCCCGAC CTGTTCTGCG TCACCTTCAG CGGCCTGTCC
AAGAGCCACA TGATTGCCGG CTACCGCATC GGCTGGATGG TCCTTTCCGG CAACAAACGC
CTGGCCAAGG ATTACATCCT GGGCCTTAAC ATGCTTTCCA ACATGCGCTT GTGCTCCAAC
GTGCCTGCCC AATCCATCGT TCAGACCGCG CTGTGGGGCC ATCAGAGCGT CAAAGGTTAC
GTCACGCCGG GCGGCCGCAT CTACGAGCAG CGTGAATACG TGTACAACGC GCTCAAGGAC
ATCCCGGGCA TCAGCGTGGT GAAGCCCGAC GCGGCGTTCT ACATCTTCCC GAAGATCGAT
GTGAAGAAGT TCAACATTAC CGACGACGTC CAGTTCGCAT TGGATCTGCT CAAGGACAAG
AAGATCCTCG TTGTGCAGGG CTCCGGTTTC AATTGGAAGG AACCGGACCA CTTCCGCGTG
GTGTACCTGC CGCGCATCGA GGTCCTCTCC GAGTGCATGA CCAAGCTGGC GGACTTCCTG
AGCTACTACC GCCAGTAG
|
|---|
| Protein sequence | MASTTFAERL KRSMAEQGLK QADLLRLAAA AEQKLGKSQL SQYVSGKTIP RRDTLHFLAD
ALHVNPDWLL NGAAAQTQAI EAPAPVSEIE LSKPISSEGR PMRTFKKSSK LDNVLYDVRG
PVVDEAMRME QDGVNVLKLN IGNPAPFGFR TPDEVVYDMA HQLTECEGYS DSRGLFSARK
AIMQYSQIKG LPNVTMDDIY TGNGVSELIN ICMSALLDSG DEILIPSPDY PLWTACATLA
GGKPVHYICD EEANWYPDLD DMRSKVTDRT KAIVIINPNN PTGVLYPPEI LQGIIDIARE
HQLMIFSDEI YDRLVMDGKE HISIASMCPD LFCVTFSGLS KSHMIAGYRI GWMVLSGNKR
LAKDYILGLN MLSNMRLCSN VPAQSIVQTA LWGHQSVKGY VTPGGRIYEQ REYVYNALKD
IPGISVVKPD AAFYIFPKID VKKFNITDDV QFALDLLKDK KILVVQGSGF NWKEPDHFRV
VYLPRIEVLS ECMTKLADFL SYYRQ
|
|---|
| |