Gene Shel_16120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16120 
Symbol 
ID8395502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1812478 
End bp1814835 
Gene Length2358 bp 
Protein Length785 aa 
Translation table11 
GC content63% 
IMG OID644986366 
Productferrous iron transporter FeoB 
Protein accessionYP_003143980 
Protein GI257064308 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0370] Fe2+ transport system protein B 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00437] ferrous iron transporter FeoB 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000453744 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGCTTG ATGCGCTTGA AAAGGGGCGG TGCGCCATCG TGAAGGCGGT CGGCGGGCAA 
GGCGCGCTCC GGCAGCATCT TCTTGATATG GGCGTGATCC CCGGCGCGCG GATGGAGTTC
GTGAAAAGCG CGCCTTTGGG CGATCCGCTG GAATACCGCA TCCACGGCTA CGAATTGACG
CTGCGCCGCG AGGACGCTTC GCAAATCGAG GTCGAACCGA TAGCATCCGA CCAGGCGGGG
CATACGTCGT ATTTCGAATC GGACCTTTCC GACGACGAGG CGGAGCACCC CGGTTTGGGC
GAAGGCGGCC GGTTCCATTC CCGTGCCGAC GAGAACCCGT TGCCTGACGA CACCGTGCTC
ACCTTCGCGC TTGCCGGCAA CCAGAACTGC GGCAAGACGA CGCTGTTCAA CCAGCTCACC
GGGGCCAACC AGCGGGTCGG CAACTTCCCG GGCGTGACGG TGGACCGAAA AGAAGGCGTC
ATCAAGGGGC ATCCGAACAC CAGCATAGTG GACCTGCCGG GCATCTACTC GATGTCGCCG
TACAGCAGCG AAGAGGTCCT TTCGCGCGCA TACATTCTGG ATGAGAAGCC CACGGGCATC
ATCAACATCG TCGACGCCAC GAACATCGAG CGCAATCTGT ACCTGACCAT GCAGCTCATG
GAGCTCAACG TGCCCATGGT GCTCGCGCTC AACATGATGG ACGAGGTGCA GAGCAACGGC
GGATCCATCC GCGTGAACGA GATGGAGGCC ATGCTGGGCA TCCCTGTTGT GCCCATCTCG
GCAGCCCATA ACGAAGGTGT TGAGGAACTG GTCGACCACG CCTTGCATGT GGCCCATTAC
CAGGAACGTC CCGGGCGCCA GGACTTCTGT GACGTGCACG ACCGAGGAGG TGCGGTGCAC
CGGTGCCTGC ACGGCATCAT GCACTTGATC GAGGACCATG CCGAGCGTGC GGGCATTCCG
GTGCGTTTCG CTGCGACCAA GCTTGCCGAA GGCGACTCCC GCGTGGCCGA GGCGCTCGAT
TTGTCCCGCA ACGAGACGGA AATGGTGGAG CACATCGTGG GGCAGATGGA GGAGGAGTGC
GGGCTTGACC GTGCGGCCGC CATCGCCGAC ATGCGGTTCT CCTTCATCGG CAAGGTGGTC
TCGCGAACTG TTGTGAAACC CCAGGAGAAC AAGGAGCATG CCCGCAGCGC CGCCATCGAC
CGGCTGCTTA CGGGCCGCTG GACCGCCATC CCGGTCTTCG TCGCCATCAT GGCGGCCATC
TTCATTCTGA CCTTCAACGT CATCGGCCCC TTCTTCCAGG ACCTGATCCA GCTGGGAATC
GACGGGGTCA CCTCCGCCAC GGCAGGAGCG CTCGACGCTT GGGGCGTCAG TCCCGTCATC
GAGTCGTTCA TTCTCGACGG CGTGTTCAAC GGTGTGGGCA CGGTGCTTCT GTTCTTCCCG
ATCATCGTCG TGATGTTCTT CTTCCTCTCG TTGCTGCAAG ACACGGGCTA CATGGCGCGC
GTGGCGTTCT TCATGGACCG CTCGCTGCGC CGCATCGGCT TGTCGGGCTC ATCCATCGTC
CCTATGGTCA TGGGGTTCGG CTGCACGGTG CCGGCGGTCA TGGCTGCCCG AACGCTGCCA
TCGGAGCGCG ACCGTAAGCT GACCATCCTG CTCACGCCGT TCATGAGCTG CGCAACCAAG
CTCACCATCT ACGGATTCGT GGCCGAGGCG TTCTTCCCGC GCAACGCCGG ATGGGTCATG
GTGGGGCTTT ACCTGCTCGG CATCCTCGTT GCCGTGGTCA TCGGTGTCGT GTCGCACAAA
TCGGTGTTCA AAGGCGAAGC GATCCCCTTC GTCATGGAGC TCCCGAACTA CCGCATGCCT
TCGGCGAAGA GCGTCGGCCG CCTGGTGTGG GACAAGTCGA AGGACTTCAT CACCAGGGCC
TTCACGGTCA TCTTCGTGGC AACCATCATC GTCTGGTTCC TCCAGTCCTT CTCCATCCGC
TTCGAGCTGG TAGAGGCGGC GGACGACAGT ATCCTGGCCA TGCTTGCGGG ATGGCTGGCG
CCCCTGTTCG CACCGCTGGG TTTCGGCGAC TGGCGCTTCG TCACGGCCCT CATCGCGGGC
TTCATGGCCA AAGAGACGGT CGTTTCAACG CTGTCTGTGC TGTTCAACGG AACGGGTGCT
TTGGTCTCGG CGCTGTCGCC GGCTGCGGCG CTGTCGTTTT TGGTGTTCTG CCTGCTCTAC
ACCCCGTGTG TGGCGGCCGT CGCCGCCATC AAGCGCGACC TGGGCGGCAA ATGGGCCGTC
GGCATCGTGG TCATGCAATG CGCGGTTGCC TGGGTGGTTG CGTTCGCGGT GTACCTGATA
GCTTCGCTGG TGATATAG
 
Protein sequence
MTLDALEKGR CAIVKAVGGQ GALRQHLLDM GVIPGARMEF VKSAPLGDPL EYRIHGYELT 
LRREDASQIE VEPIASDQAG HTSYFESDLS DDEAEHPGLG EGGRFHSRAD ENPLPDDTVL
TFALAGNQNC GKTTLFNQLT GANQRVGNFP GVTVDRKEGV IKGHPNTSIV DLPGIYSMSP
YSSEEVLSRA YILDEKPTGI INIVDATNIE RNLYLTMQLM ELNVPMVLAL NMMDEVQSNG
GSIRVNEMEA MLGIPVVPIS AAHNEGVEEL VDHALHVAHY QERPGRQDFC DVHDRGGAVH
RCLHGIMHLI EDHAERAGIP VRFAATKLAE GDSRVAEALD LSRNETEMVE HIVGQMEEEC
GLDRAAAIAD MRFSFIGKVV SRTVVKPQEN KEHARSAAID RLLTGRWTAI PVFVAIMAAI
FILTFNVIGP FFQDLIQLGI DGVTSATAGA LDAWGVSPVI ESFILDGVFN GVGTVLLFFP
IIVVMFFFLS LLQDTGYMAR VAFFMDRSLR RIGLSGSSIV PMVMGFGCTV PAVMAARTLP
SERDRKLTIL LTPFMSCATK LTIYGFVAEA FFPRNAGWVM VGLYLLGILV AVVIGVVSHK
SVFKGEAIPF VMELPNYRMP SAKSVGRLVW DKSKDFITRA FTVIFVATII VWFLQSFSIR
FELVEAADDS ILAMLAGWLA PLFAPLGFGD WRFVTALIAG FMAKETVVST LSVLFNGTGA
LVSALSPAAA LSFLVFCLLY TPCVAAVAAI KRDLGGKWAV GIVVMQCAVA WVVAFAVYLI
ASLVI