Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_09910 |
Symbol | |
ID | 8394882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1133686 |
End bp | 1135281 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644985750 |
Product | tRNA/rRNA cytosine-C5-methylase |
Protein accession | YP_003143377 |
Protein GI | 257063705 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000618646 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGCGCAT ACAGAGGCCG TGAGGGCATG AACTCGAATC GCGGTGACGG ACAGGGCGGC CGAGGCGGAT CGCCCCGGGA TGCGCATGGC GACCGCGGCG GCTACAAAGG CCGCAGCGAC TCCCGCGAAC GTTCGAATGG GCGCAAAGAC GCGGACGGCA GACGCGTCGG CGGCGGCCGC CGCGTGTATG TGGGAAACGG CGGCCGCAGC GGCGGCAACG CCCGGGCATC CCATTCGGGA AGGTCGTCCC AGGCTCCGCG ACGGCTCGAG AACCATGCGT CCCCGGCCCG TATCGCCGCC TGTTTGAGCT GTCGGATCGT ACGAGAGCGC GATGCATTCG TCTCCGAGGT CGTGCCCGGC GTGGTCTCTC GCATGGGGCC GATGAAACCC GAGGACGTAG CCTTCGCCAC ACGGCTTGCC CGAGGCGTGG TGGCGACCAG CGGCGCTTTG GACGATTTCA TCAACCGCAA CCTGTACAGC CCGGCCGACA TCCAGCCCAA CGTGCGCGAT GCGCTCCGCG TGAGCGCCTA CGAGCTTCTG TACCTGAAGA AAGACGACTA CGTAGCCGTC GACCAGGGTG TCGAGCTGGT GGCGTACGTA GAACCGAAAG CCCGGGCGCT GGCAAACGCC GTGCTTCGCA AGATGGCGCG AACGGCTTCG CGCTGGCCTT TCGGCGACGT GGGCACCGAT GTGGTGGCGC TGTCCCGCAA GGTCGCCTTT CCCTCTTGGA TGGCTAAGCG GCTCGTGGAG GAGATGGGTC GCGAGCAGGC CGCCGCGTTC ATGGAGGCTT CCAACGGCGA TGCCCCCGTG CATGCGGCCG TCAACGCCAT TCGCGCCACG GACGAAGAGG TGTTGGCCGT GCTGCAGGAG CAGGGGGCCG ACCCGAACCT TGTGGAAGGC ATCCCCGGGT GCATCCGCAT CGGGACGCCT AAGGCCATCC GCAGCGATGT GGTGACTAAG CTGTTCGAGG ACGGCAAGGT GCTGATTTCG GACCCGTCGG CCCAGAAGGT CGCCTCCTTC GCCCTGCCTG GCGAGCCTCC TTCGGCGTTT ATCGAGGTGG GAAGCGGACG CGGAACCAAA ACCGTGCTCA TGCAGAGCAA CGCGATGCGC AAGTACGGCA AGCAGTTCCC GATCGTGTCG GTGGACGACC ATCCGTTCAA GGCCAAGCTG CTGCGCAACA GGGCCCGCGA ATACGGCCTC ACGTCGGTGC AGACGAAGGT GGCCGACGGT AGGAAGCTCA CGTCGCTGTA CGAGAAGGGC AGCTTCGACG CGGTGTTTGT GGACGCTCCC TGTTCGGGGG TGGGCACGCT GCGCCGCCAC CCCGAGATCC GCTGGCGCCT GACAGAGCGA GACGTGGCCA AGATGGCCGA TGTGCAGCTG GACATCCTCA TCGATGCGGC GTCGCTCGTC AAAACGGGCG GCCAGGTGGT CTATTCCACC TGCACCGTCT TCCGTGAGGA GAACGAGCGG GTGGTGGAGC GCTTCCTGAA AACCAAGTTC GGCGAGCGGT TCGAGATGAC CGAAATGTTG AAGATGTCGC TTGAGGAAGA CGGCCCCGAC GCCCATTTCG CGGTGCGCCT GACCAAGCGT TTCTAA
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Protein sequence | MCAYRGREGM NSNRGDGQGG RGGSPRDAHG DRGGYKGRSD SRERSNGRKD ADGRRVGGGR RVYVGNGGRS GGNARASHSG RSSQAPRRLE NHASPARIAA CLSCRIVRER DAFVSEVVPG VVSRMGPMKP EDVAFATRLA RGVVATSGAL DDFINRNLYS PADIQPNVRD ALRVSAYELL YLKKDDYVAV DQGVELVAYV EPKARALANA VLRKMARTAS RWPFGDVGTD VVALSRKVAF PSWMAKRLVE EMGREQAAAF MEASNGDAPV HAAVNAIRAT DEEVLAVLQE QGADPNLVEG IPGCIRIGTP KAIRSDVVTK LFEDGKVLIS DPSAQKVASF ALPGEPPSAF IEVGSGRGTK TVLMQSNAMR KYGKQFPIVS VDDHPFKAKL LRNRAREYGL TSVQTKVADG RKLTSLYEKG SFDAVFVDAP CSGVGTLRRH PEIRWRLTER DVAKMADVQL DILIDAASLV KTGGQVVYST CTVFREENER VVERFLKTKF GERFEMTEML KMSLEEDGPD AHFAVRLTKR F
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