Gene Shel_08760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_08760 
Symbol 
ID8394767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1016058 
End bp1016987 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content63% 
IMG OID644985636 
Producttyrosine recombinase XerD 
Protein accessionYP_003143272 
Protein GI257063600 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.940341 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000128305 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
TTGGACGAAG GGAGCGCTGC AGTCGCTCCC TTTCTTCCCG ACCGCAACGA TTATCTGGCC 
TATTTGTCCG TCGAGCGCGG TTCCTCGTCG TTGACGGTGG GTTCCTACGC GACCGACCTG
AACGACTACA TCTCCTTTTT GGGGGAGCGG GGCGTGCCCG ACAGCGCCGC CATCACCCGC
GACGATGTGG TGGCCTACGA ATACGACCTG CGCCGCCGCG GCTATGCTGA CTCCAGCATC
GAACGGCATC TGTCGGCGCT CAAGGGCTTC CATCGGTTTT TGGTGGGAGA GGGTGTGACG
AAGGGCAACC CCGCAGACCT GGTGTCGCTT CCCAAAGTCC CCGACCGCCT TCCGGACGTG
CTGTCCGTAT CCGAAGTGAA CGAGCTGTTG GACCAGCCGT TCAAGGATGG TCCTTTGGGT
CTGCGCGACC AGGCCGCATT GGAGCTGCTG TACGGATGCG GCCTGAGGGC GAGCGAGCTC
ATATCCCTCG ACCTGGGAGA TGTGTTCTTC GCCGAAGGCA TCCTTCGGGT CATGGGCAAG
GGGTCCCGCG AGCGCATCGT GCCCATTGGC GGCAGCGCGC AGCGGGTTCT TCTGGATTAT
CTGGAAAACG GCCGTCCCAA GCTGGCCAAA CCCTCGAAAA CCGACGGCGC CGTCATACTG
AACGCCCGAG GTGGAAGGCT TTCCCGCCAG GCATTGCACA CGATCGTGCG TACGGCCGGC
GCGACCATCG GGCGACCCGA CCTGCATCCC CATACGCTGC GGCATTCGTT CGCCACCCAC
ATGCTGGAGG GCGGGGCGGA CCTGCGAACC ATCCAAGAGA TTCTGGGGCA TTCCGACATC
TCCACCACGC AGATTTACGT GCATGTGGAC CGTTCCCACA TCCGCGAAGA GTATCTGGCG
GCCCATCCTC GCGCCCATCT GAAGGCTTAG
 
Protein sequence
MDEGSAAVAP FLPDRNDYLA YLSVERGSSS LTVGSYATDL NDYISFLGER GVPDSAAITR 
DDVVAYEYDL RRRGYADSSI ERHLSALKGF HRFLVGEGVT KGNPADLVSL PKVPDRLPDV
LSVSEVNELL DQPFKDGPLG LRDQAALELL YGCGLRASEL ISLDLGDVFF AEGILRVMGK
GSRERIVPIG GSAQRVLLDY LENGRPKLAK PSKTDGAVIL NARGGRLSRQ ALHTIVRTAG
ATIGRPDLHP HTLRHSFATH MLEGGADLRT IQEILGHSDI STTQIYVHVD RSHIREEYLA
AHPRAHLKA