Gene Shel_08500 details

Gene Information

• Locus tag: Shel_08500
• ID: 8394741
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Slackia heliotrinireducens DSM 20476
• Kingdom: Bacteria
• Replicon accession: NC_013165
• Strand: +
• Start bp: 990481
• End bp: 990921
• Gene Length: 441 bp
• Protein Length: 146 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644985610
• Product: T/G mismatch-specific endonuclease
• Protein accession: YP_003143250
• Protein GI: 257063578
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3727] DNA G:T-mismatch repair endonuclease
• TIGRFAM ID: [TIGR00632] DNA mismatch endonuclease Vsr

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.119138
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGAGCA AGGCTCCCCA TTTCGAGAAC GTGTCTCCGG CCGTACACAA GAGCATGACG 
TCGAACAAGG GCAAGAACAC CAAGCCTGAA CTGCTGGTGC GCAAACGACT TCGCGAAGAC 
GGGCTTCTGG GGTACCGCGT GCACTGGAAG GTGCCGGGGC ACCCCGATGT GGCATGGCCT 
GGCAAGAAGG TCGCGATCTT CGTCCACGGC TGCTTCTGGC ACCGTTGCCC GCACTGCCAG 
CTTCCCGTGC CGAAGACGAA TCAGGAATAC TGGATCCCTA AGTTCGAGCG CAATGTCGAG 
CGGGACCGAG AGAACATTGC CAAGCTGGAA TCCGACGGTT GGCGCGTGCA TGTCATTTGG 
GAATGCGAGT TGAAAAAGAA GAACGTCGAG GCCACGTTCG ACACGCTTCT GCCCGAACTC 
CATAAGGAAT TGGGCAAGTA G 

 

Protein sequence

MTSKAPHFEN VSPAVHKSMT SNKGKNTKPE LLVRKRLRED GLLGYRVHWK VPGHPDVAWP 
GKKVAIFVHG CFWHRCPHCQ LPVPKTNQEY WIPKFERNVE RDRENIAKLE SDGWRVHVIW 
ECELKKKNVE ATFDTLLPEL HKELGK