| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_08230 |
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| Symbol | |
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| ID | 8394714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 954173 |
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| End bp | 955384 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985583 |
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| Product | phage major capsid protein, HK97 family |
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| Protein accession | YP_003143228 |
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| Protein GI | 257063556 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0061868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00502474 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAAGT ACAACACCGT TGCCGAGGCT TACGGTTTCT GGAAGAACTC TAGCGTCGCC
GTCATGGAGG CACGCGCCAA GGCCATCGAG AAGGACATTG CAGAAGACCC GAACGCCGAC
GTTGCGGGCT ACGCAATCGA GGCCGAGGCG TTGGAGCAGG CCATCGCGGA GAAGCGAGGC
GCACAGCCCG CCACCAGCGC GAACGCGCCC GCCGAGGTCG CCAACACCGC CAAGGGCGAG
AAGGACGGCG AGGGCGCGGC CTCGAAGGTC TACCGCTCCG CATTCTTCAA GCACCTGCAA
GGCAACAAAC TCACCCAGGC CGAGCAGGCC GCGTTCGACA ACGTTAACGC CGAGGCGCGA
GCCAACGCAT TTAACAAGCT GTCCGACACG GCGGCTGTTA TTCCGACCCA CACGCTTAAC
GAGATCATCG TCAAGGCGCG TGACATGGGC GGCATCATGA GCATTTCCCG CGGCTTCCAC
ATGCCCGCGA ACATCAGCAT TCCCGTTGCG ACACCGGGCG CGGCTGCGTC CTGGCACGTC
GAGGGCGCTG CCGTCGAAAC CGAGAAGGTT TCTCCCGTCC CCGTCACGTT CGGCGCTTAC
GAGATCATGC GCATTCTCTC CATTTCGGCG GCTGTGCGCA CCATGTCTAT CGGCGCGTTC
GAGAGCTACC TTGCCGACGA GCTGACCGCC TCCGTCATGG CTTGCCTTGG TAACGCCATG
GTTGACGGCA CGGGCAGCGG GCAGGGTACG GGCATCGTCT CCGGCATCAC CTGGACTGAC
GGCACCAACA AGGTAACGGT TGCCGCCAAC AAGTCGCTTG CATACGCCGA CATCGTCAAT
GCAATTGCCC TGCTGCATCG CGGCTACTCG CAGAACGCCC GATTTGTCAT GAACAACACG
ACCCTTTACA CGGACGTTTA CGGCCTGGTC GACGAGAACA AGCGGCCTAT CTTCGTTGCT
GACCCCGTGG AGAAGGGCAA GGGGCGCATT CTCGGTTTCC CCGTCGTGAT TGACGATTAC
ATGGAAGACC ACGACATTCT GTTCGGCGAC TTCCGTTACA ACGGCTGGAA CATGCCCGAG
GGAATCGCGC TTGACGTTTC CCGCGACAGC TCGTTCACCA AGGGGCTTAT CGACTACCGC
GCCCTGGCAA TCGCGGACTG CAAGCCCATC GTCGCCGATG CTTTCGTTTA CGTCACCAAG
GCGACGGCCT AA
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| Protein sequence | MTKYNTVAEA YGFWKNSSVA VMEARAKAIE KDIAEDPNAD VAGYAIEAEA LEQAIAEKRG
AQPATSANAP AEVANTAKGE KDGEGAASKV YRSAFFKHLQ GNKLTQAEQA AFDNVNAEAR
ANAFNKLSDT AAVIPTHTLN EIIVKARDMG GIMSISRGFH MPANISIPVA TPGAAASWHV
EGAAVETEKV SPVPVTFGAY EIMRILSISA AVRTMSIGAF ESYLADELTA SVMACLGNAM
VDGTGSGQGT GIVSGITWTD GTNKVTVAAN KSLAYADIVN AIALLHRGYS QNARFVMNNT
TLYTDVYGLV DENKRPIFVA DPVEKGKGRI LGFPVVIDDY MEDHDILFGD FRYNGWNMPE
GIALDVSRDS SFTKGLIDYR ALAIADCKPI VADAFVYVTK ATA
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