| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_08160 |
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| Symbol | |
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| ID | 8394707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 945920 |
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| End bp | 949507 |
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| Gene Length | 3588 bp |
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| Protein Length | 1195 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985576 |
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| Product | putative collagen-binding protein |
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| Protein accession | YP_003143221 |
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| Protein GI | 257063549 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000954131 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCGAC CCACCATCTT CAGCCGGCAC CTCCGAAACT CGGGAGGGTT CGCTGGAACC
GAATCCGGAA TCCACCGCCC TGCACGCACA CAGCGGCTGA ACGCCGCCTG CTCGGTGCTT
CTGGCGCTTT GCCTCGCCTT CACCATGGTG ATCGCAGCCC CGACATCCGC ATATGCAGTA
TCGGCCTCCG TCTACGACGT GAAACCGAAC CCCAACGGGT CGCAAACCGT CGACGAGTAT
TTCGGTATCG CAGGAAAGGT GCAGCCGTGG CTGGAATCCC ACGAGCATGA CGACTACTAC
CTCGGAACGG AATACGACGG TTGGAACAGC GGCGAGCTTA CCGAATCGGA AATCGCCCAT
TGCCGCAGGC CCAAAGGTGA AGTGGGCAGC AACGACCCCG GCATGAACTG CACGGGATTC
GTCACGGCCG TGTTCATGAA ACTCGGCGCC GACGTGCCGG GCAAGATTCC GCACACCGGC
ATCGGCAGCT GGTGCAACAC GGGAAACTGG CTGCGCCTGC TGGAAGAACA GGACGTCGTC
GGATACGAAT ACGACAGCGT CGATGCGCTG CTGAAGGACG GCAAGGCCCA GAAAGGCGAC
ATCATCCTCA TGCTTTGCAC CAGTAGCGTG TGGTCTGCAG GCGTCGATAA GTACGGCAAC
TACGCCGACT GGCACATCGG ATTCTTCTGG GGCGACAGCC CATCCGACAA TAAATACTGG
CACTCCTCCC ACCCCGTCAA CGGAATCGAC GGAGGCGAAT CCCTCAAGTA CTCCAACCAG
ATTTCCAAAA TCGTTCCCAA GGCGCAATCG GACAAATTCT TTCTGCTGCC CGTGCAGCAT
GAAGGGTCCA TCGAGCTGAC CAAGACGTCG AACAACCCGG ACATGACCGC TTCGAACGGG
CAGTACTCGC TGAACGGCAG CTGCTACACG GTTTACTCCG ACAAGGCCCT CAAGAAGAAG
GTCGGCACGC TGAAAACGAA CGCGTCCGGA ACCGCGACCA TTGATGTGGC GGCAGGGACG
TACTACATCC AGGAAACGGC AGCGCCCCAT GGCTACGCCA CGGACACGGC GGTCTACACC
GTGACGGTCA AAGCCAGCAA GACGACGAAG CTTGCCGTTA AGGAAACGCC GCAAAGCGCC
CAGGCGGGCC TTCTCGTCGC AAAGCACGAC GCGGATTTCG GAAACAGAGC CCAAAACAGC
GACACGAGCG GAAACGTTCC GCAGGGTGGC GCATCCCTGG CGGGCGCAGA GTTCACCGTG
AAGCATTTTG CTACCGACGA CGCATCGAAA GGCCCCCTGC GCACCTGGGT GTTCGCAACC
GACGAGCATG GTTCCCTAAC CCTGGACGCC AAACATCTGG TATCGGGAGA TGCCCTGTAT
ACCGACAGCG CCGGCAACCC GGCCTTGCCG TTAGGAACCT ATTCCATCCA GGAGACGGCG
GCTCCTGCCG GATATCTGCT CGACGATACT GTGCGCACCA TAACCGTCAA CGCCCAAGGC
AGCACCGAAC ACTCCCCCGT CTATCAGACG GCCGCCGCCC CCGAATCCGT CATCCGCGGC
GGACTGTCCG TCCAGAAGCT GGATGCGGAA ACCGACGGTA ACGAGCCTTT GGGAGAAGCG
ACGCTCGAAG GGGCGCAGTT CGCCGTCAGC AACGGCAACG ACAACCCGGT GGTTGTCGGC
GGCGTCACCT ACCAGCCAGG CGAGACGATC CTGACGCTGA CCACCGACAG TGAAGGATTT
GCCCAGACCG CAGAGGACGC CCTTCCATAC GGACGCTACC TTGTAGCCGA AACCGTCGCG
CCACGGGGAT ACCTGCTGCA GAACGACGGC TTCGCCTCCG AGGCGTTCGT CGGCGAGCAG
GGCAAGGTGT CGCAGGTGGA TGAGGCCGCC GAAAACCAGG TGAAACGGGG CGATATCGAA
TTCAAGAAGA AGGACGAATC GAGCTCTACG GCCTTGGCGG GCATCCCCTT CCGCATAACC
TCCGAAACCA CGGGCGAAAG CCATGTCATC GTGACCGACG AGAACGGCTA CGCCTCAACC
TCGTCCGACC AGGTGCCCCA CAGCTCGCAG ACCAACGGAA ACGACGGCGC CGCTGAGCCC
GCCTGGGAAA TCGGGGTGTG GTTCGGCGTA ACCGAAAGCG GCGTGCAGGC ACCCGTCAAC
GATGCGCTCG GAGCGCTTCC ATACGACACC TATACCATCG AAGAACTGGC ATGCGAGGCC
AACGCCGACA AGTCGTTGGT GAAGCAGGAG CACGTGGTAG TCCACCGCGA CATGAGGACC
GTCGATCTGG GCACCATCGA CAACCTGGAT CTTTACATGG CCACCCAGGC TCAGGATGCC
TCCGACGGCG ACCAAGTGGT CGCGGCCGAT ACCGAGGCGA CCATCGTCGA CACGGTTCGC
TACGTCGGGT TGCAGCGCGG CGCGGACTAC ACCCTGCATG CCGAGCTCAT GGACGCCTCG
GCAGGCGAAC CCGTCCTAGA AGCAGGCGAG CCCGTATGCG CCGACGTCCA GTTCGCAGCC
AAGACCCCCA ACGACTCCGT GGAGGTGCCG ATTACCTTCG ATGCTTTGGC TCTGGAACAG
ACCGGCCCTC TGGTCGTTTT CGAAACGCTG CTGGACGCTC AGGGCAACGT CGTGACCGAA
CATAAGGACC TCGAGGACAA AGACCAGACC GTTACCGTCG TCAAACCCGA AATAGGCACG
ACGGCCGCAG ATGGAAGCGA CGGGGACAAA ACGGTATCGG CGAGTATGTC ATCAACGATT
GTGGACACGG TGGCGTACAA GGGGCTCACA CCCGGCAAGA CCTACACGGT GACCGGCGTC
CTCATGGACA AGGGAAGCGG CGAGCCATTG CTGCAGGACG ACCAAGCCAT TACAAGCTCC
GCGGAATTCA CTCCAGAAGC CGCTGAGGGC TCCGTTGAGG TGGTGTTTGA GTTCTCGAGT
TGCAACTATA CGGAAACAAG CATCGTTGTG TTTGAGACGC TTCTGAGGGG CGATCGGGAA
GTTGCCGTCC ATGCCGACAT AGAGGATGAG GCCCAGACGG TCACGGTTGA GAAGCCGAGC
ATTCGGACGA CCGCCGTCGA CGGTTCGGAC CGAGACAAGG CGATTTCGGC TGCCAAGGGC
CAAAAGATCG TGGACACCGT GACGTACCAG GGGCTGGTGC CTGGGCAGGA GTACCGCGTA
AGCGGCACGC TGGTGGACGT CTCGACGGGC GAGCACGTGA AAGTGGACGG GAAAGAACTG
ACCTCCGACG CCGTGTTCAC GCCTGATAAG CCGTCGGGGA GCGTCGACGT GACATTCGTG
TTCGATGCCA CGTCCTACGG ATCGAGCTCA ATCGTCGTCT TCGAGACCCT GTATCAGAAG
GACGTTGAAC TGGCCGTGCA TGCGGATTTG GAAGACGCCG ACCAGACCGT GCGGGTTGAC
CAGCCCGATC AGCCCCACAA GCAGGAGAAA GGCAGAGGAT TCTCCAAAAC CGGAAGCATG
CTGAGGGAAT ACCGGTGGTT GGCGGCAGCT TTGGCCGGCG TGACCGTCGC CGCAGCGTCG
CTGGGCGTCT GGAGCATCCG ACGCAGCCGT CGCGGGGAAA CGTCGTAG
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| Protein sequence | MNRPTIFSRH LRNSGGFAGT ESGIHRPART QRLNAACSVL LALCLAFTMV IAAPTSAYAV
SASVYDVKPN PNGSQTVDEY FGIAGKVQPW LESHEHDDYY LGTEYDGWNS GELTESEIAH
CRRPKGEVGS NDPGMNCTGF VTAVFMKLGA DVPGKIPHTG IGSWCNTGNW LRLLEEQDVV
GYEYDSVDAL LKDGKAQKGD IILMLCTSSV WSAGVDKYGN YADWHIGFFW GDSPSDNKYW
HSSHPVNGID GGESLKYSNQ ISKIVPKAQS DKFFLLPVQH EGSIELTKTS NNPDMTASNG
QYSLNGSCYT VYSDKALKKK VGTLKTNASG TATIDVAAGT YYIQETAAPH GYATDTAVYT
VTVKASKTTK LAVKETPQSA QAGLLVAKHD ADFGNRAQNS DTSGNVPQGG ASLAGAEFTV
KHFATDDASK GPLRTWVFAT DEHGSLTLDA KHLVSGDALY TDSAGNPALP LGTYSIQETA
APAGYLLDDT VRTITVNAQG STEHSPVYQT AAAPESVIRG GLSVQKLDAE TDGNEPLGEA
TLEGAQFAVS NGNDNPVVVG GVTYQPGETI LTLTTDSEGF AQTAEDALPY GRYLVAETVA
PRGYLLQNDG FASEAFVGEQ GKVSQVDEAA ENQVKRGDIE FKKKDESSST ALAGIPFRIT
SETTGESHVI VTDENGYAST SSDQVPHSSQ TNGNDGAAEP AWEIGVWFGV TESGVQAPVN
DALGALPYDT YTIEELACEA NADKSLVKQE HVVVHRDMRT VDLGTIDNLD LYMATQAQDA
SDGDQVVAAD TEATIVDTVR YVGLQRGADY TLHAELMDAS AGEPVLEAGE PVCADVQFAA
KTPNDSVEVP ITFDALALEQ TGPLVVFETL LDAQGNVVTE HKDLEDKDQT VTVVKPEIGT
TAADGSDGDK TVSASMSSTI VDTVAYKGLT PGKTYTVTGV LMDKGSGEPL LQDDQAITSS
AEFTPEAAEG SVEVVFEFSS CNYTETSIVV FETLLRGDRE VAVHADIEDE AQTVTVEKPS
IRTTAVDGSD RDKAISAAKG QKIVDTVTYQ GLVPGQEYRV SGTLVDVSTG EHVKVDGKEL
TSDAVFTPDK PSGSVDVTFV FDATSYGSSS IVVFETLYQK DVELAVHADL EDADQTVRVD
QPDQPHKQEK GRGFSKTGSM LREYRWLAAA LAGVTVAAAS LGVWSIRRSR RGETS
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