Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_06820 |
Symbol | |
ID | 8394574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 797266 |
End bp | 799803 |
Gene Length | 2538 bp |
Protein Length | 845 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644985444 |
Product | anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
Protein accession | YP_003143090 |
Protein GI | 257063418 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases [TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.460369 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTCAAGA ACGACGAGCT TACCGTCTCG CGCCGTAAAT TCGTGAAGGG CTCGTTCGCG GGCGCCGTTG CGACCGCCGG CGTTCTGGGC GGTGCATCCA TGTTCGGCTG CTCGCCGAGC GAAGAGGGTG GAGAAACGAC CGCACCCGAA AGCGCCGAGG AAGCCGCAAG CATGCCGGCT CCTAACGCAC TTCCCGAGGA CACCATCACC TGGTGCCAGT GCAATGTCAA CTGCGGCGGT AACTGCGTGT TCCAGTGGCA TTCCCAGGAC GGCAAGGTCA CCTATATGGA GACCGACAAC ACGGGAGACG ACGAGAACTT CCAGGCCCGC GCCTGCCTGC GCGGCCGCAG CATGCGTCGC TGGCTGAACA GCTCCGAGCG TCTGCTCTAT CCCATGAAGC GCGTGGGCAA GCGCGGTTCC GGCGAGTTCG AGCAGATCAC GTGGGACGAG GCTCTGGACC TGCTGCATGA CAAGCTGCAG TACACCATCG ACACGTGGGG CAACGAGGCC ATCTACCGCA TCTACGCCAC CGGCATGTAT TCGACCACCG GCAATCCGTC CAAGCGTTTC CTGAACTGCA TCGGCGGCTG CGTTGACCAG CTGTACGACT ACTCCACGCA CATGCTGCAG GCTATTATGC CCTTCATGTA CGGCACCCAG TTCTCGCCCT ACGACAACGT GCACGCCTCT TCCTTCAGCG AGGCCGAAGC CAACTCCGAC CTGGTGGTCA TGTTCGGCAA CTCTCCGGCA GAAACCCGCA TGGGCGGCAT CAACGCCGTG TGGGACTTCG CCAAGGTGCG CGAAGCCGTC CAGTCCCGCG GCGGCAAGAT CGTCAACATC GACTATCGTC TGAACGAAAC CTCTTCGGGC CATCCCGAAG AGTGGCTGCC CATCCGCACC GGCACCGACG CCGCGCTGTG CGCAGCCCTC ATCCATGAGT TCATCGCCGA CGGCAAGACC GACGAGGACT TCCTGTCCAC CTACTGCGTA GGATGGAACG AGGACACCAT GCCCGAAGGC TCCAAGGGCA AGAACCTTTC CTACTACGAC TACATCATGG GTACCGGCTA CGACAAGGTG GAGAAGACCC CCGAATGGGC CGCTCCCATC ACCCAGATTC CGGCCGACAC CATCCGCGCT CTGGCCGCCG ACCTCGAAAA CGCCGAAGCT CCCTTCGTGG TGCAGGGCTG GGGTCCGCAG CGCCACACCA ACGGCGAAGA GGCTTGTCGC GCCATCTGCA TGGTTCCCAT CGCGCTGGGC AAGATCGGCC TTCCCGGCAC CAACACCGGC CAGCGTGAGG CCGAGCCGCC CATCTACCTG GTCGGCAGCA TCCCCGGCGC CGACGAGAAC GGCCCCGTTA CCCAGGGCTG CTCCATCCTG ATCCCCGTGT ACCAGTGGCT CAACGTCGTC GACCACGGCA CCGAGATGGG CGTGAAGAAG GGCGGCATCG TCGATCCCGC AGGCGAGCTC GACGACAACG ACGGCATGCT CCACACGAAC ATCCACTTCA TCTGGAACTA CGCCGGCAAC TGCATCACCA ACCAGCACGG CGACGCCAAC AAGGTCTATG ATGTCCTCAA TTCCATCTCC GATGACGACC TGTTCATCAT GACCTGGGAT ACCGTCATGA CCGACTCCGC GAAGTACTCC GACCTGATCC TGCCGGACGC CATGCGCTCC GAGCAGATGA ACATGCAGAC CCAGGGCTAC GCCGAGTACT ACGCCGGCGT CACCGTCGGC AACCCCGCCC AGGAAGCTCC CGGCGAGTGC CGCAGCTCCT ATGATGTGTT GGCCGATTTG GCCGAACGCT TCGACATGCG CGATGCCTTC ACCAACGGCG GCATGACCCA TGACGACTGG GTGAAGTACC TCTACGAGAA CAACTTCTCC GAGGCCTATG GCATCGAGAT GCCTACCTGG GATGAAATCC TGGAGCAGGG CGTGTTCAAG CTGCCCGTCG ACCCCTCCGT CGGCCTGAAG GCGTTCCGCG ACGACCCTGA GGCCAATGCC CTGGGCACCC CGTCCGGCAA GATCGAAATC TACTCCGAGC AGCTCGCCGC CCTCAACGAT GAGTGGGAGC TCGAGTACGA GGACGAACCC ATCCAGCCGC TGCCCATCTT CAACCCCGGC TTCCACGGCT ACGGCTCGGT GACCGATGAG TATCCGCTGT ACTGCACCGG CTTCCATCAC AAGAGCCGCA CGCACAGCTC CTACGGCTTC ATCCGCGAGC TCGAGCAGGT CGCCCGTCAG CAGCTGTGGA TCAACCCCAT GGACGCCGAG GCCCGCGGCA TCGCCAACGG CGACCAGGTC ATCGTGACGT CGCCCGCAGG CCAGATCAAG ATCGAGGCCA AGGTGACCTC CCGCATCGTA CCCGGCACGA TCGCCGTGCC CCAGGGTTCG TGGCGCAAGG CAGATATGGA AGGCGACCGC ATCGACGAGG GCGGCTGCGT GAACACGCTG TCCGTCTACC ATCCGACGCC GTACGCCAAG GGCAACGGCC CTGCCCATTC CATGATCGCC GAAGTCGCCA AGGCTTAA
|
Protein sequence | MVKNDELTVS RRKFVKGSFA GAVATAGVLG GASMFGCSPS EEGGETTAPE SAEEAASMPA PNALPEDTIT WCQCNVNCGG NCVFQWHSQD GKVTYMETDN TGDDENFQAR ACLRGRSMRR WLNSSERLLY PMKRVGKRGS GEFEQITWDE ALDLLHDKLQ YTIDTWGNEA IYRIYATGMY STTGNPSKRF LNCIGGCVDQ LYDYSTHMLQ AIMPFMYGTQ FSPYDNVHAS SFSEAEANSD LVVMFGNSPA ETRMGGINAV WDFAKVREAV QSRGGKIVNI DYRLNETSSG HPEEWLPIRT GTDAALCAAL IHEFIADGKT DEDFLSTYCV GWNEDTMPEG SKGKNLSYYD YIMGTGYDKV EKTPEWAAPI TQIPADTIRA LAADLENAEA PFVVQGWGPQ RHTNGEEACR AICMVPIALG KIGLPGTNTG QREAEPPIYL VGSIPGADEN GPVTQGCSIL IPVYQWLNVV DHGTEMGVKK GGIVDPAGEL DDNDGMLHTN IHFIWNYAGN CITNQHGDAN KVYDVLNSIS DDDLFIMTWD TVMTDSAKYS DLILPDAMRS EQMNMQTQGY AEYYAGVTVG NPAQEAPGEC RSSYDVLADL AERFDMRDAF TNGGMTHDDW VKYLYENNFS EAYGIEMPTW DEILEQGVFK LPVDPSVGLK AFRDDPEANA LGTPSGKIEI YSEQLAALND EWELEYEDEP IQPLPIFNPG FHGYGSVTDE YPLYCTGFHH KSRTHSSYGF IRELEQVARQ QLWINPMDAE ARGIANGDQV IVTSPAGQIK IEAKVTSRIV PGTIAVPQGS WRKADMEGDR IDEGGCVNTL SVYHPTPYAK GNGPAHSMIA EVAKA
|
| |