| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_05120 |
|---|
| Symbol | |
|---|
| ID | 8394404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 600012 |
|---|
| End bp | 600782 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644985275 |
|---|
| Product | dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein |
|---|
| Protein accession | YP_003142921 |
|---|
| Protein GI | 257063249 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.627733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGA AAATGCTTGA TGGCAAGGTA GCAATCATCT CGGGGGCCAG CTACGGCATG
GGATTGACGA TGGCGGAGCT GTTCGCCAAA GAGGGGGCGA AGGTCGTCAT GACGGCTCGC
GGCCCCGAAA AACTGGACGC GGCCGTGAAT AGCCTGCGTG AACAGGGGCT TGAGGTTACC
GGCGTTGTGG CCGACAACAA GAACCTCGAT GATGTGAAGA AGGTCATCCA AACAGCCCTC
GACGTGTACG GCGACTTGGG CATCGTCATC AACAACGCCG CCATCGGCGA GCAGAAGATG
ATTGACGAAA CCGATGACGA GTGGCTGGAG CACGTGTATC AGACCAACGT GTTCGGTCCC
TTCCGTTTCA TCCGCGAAGC CTTGAAGGTA TTCATGCCGA AAAACGAAGG CTGCATCATC
AACATCTCGT CGGTCAACGG CGAGCGCCCG TTCTGCGGTG CGTCGTACAC GTCTTCGAAG
GGCGCCATCA ACACCCTGAC CAAAAACGTG GCGATGCGCC TGATCGACAC GAATATCCGC
ATCAACGCGG TAGCTCCCGG TGCAACGGTC ACGCCTGCGC ACCTCGCGAA CAAGGCGGGG
GAGCAACCTG GCGGTGCGAA GATGCTCGAG TACAGCAAGC ATTTCGTGTA CTTCCCCGGT
CCCGAATGCG ACCCCATCGA CCAGGCGAAC GCATGCCTGT TCCTGGCGTC TGACATGGGC
AAACATGTAA AAGGCCAGGT TATTCAGGTG TGCAACGGCG CTTTCCTGTA A
|
|---|
| Protein sequence | MEAKMLDGKV AIISGASYGM GLTMAELFAK EGAKVVMTAR GPEKLDAAVN SLREQGLEVT
GVVADNKNLD DVKKVIQTAL DVYGDLGIVI NNAAIGEQKM IDETDDEWLE HVYQTNVFGP
FRFIREALKV FMPKNEGCII NISSVNGERP FCGASYTSSK GAINTLTKNV AMRLIDTNIR
INAVAPGATV TPAHLANKAG EQPGGAKMLE YSKHFVYFPG PECDPIDQAN ACLFLASDMG
KHVKGQVIQV CNGAFL
|
|---|
| |