| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3922 |
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| Symbol | |
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| ID | 4457742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 4776244 |
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| End bp | 4779402 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639704695 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_848026 |
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| Protein GI | 116751339 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.222699 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTCCC GATTCTTCAT CGACCGGCCG ATTTTTGCCA ACGTCATCGC GATCGTGACC
ATCATTTTCG GTCTTGTGAC GCTGCTGCTG CTGCCTGTTG AGCAGTATCC CCAGATCACG
CCGCCCACGG TCCTCGTGTC GACCGTCTAT CCGGGGGCGA GCGCCGAAGT GGTGGCGGAT
ACGGTCGCGG CGCCCATCGA GCAGCAGGTG AACGGCGTCG AGCACATGCT CTACATGTCC
TCGAACTCGG CCAATGACGG GTCCTACTCG CTCACGGTGA CCTTCGAGGT CGGGACCAAC
CTCGATATGG CCCAGGTGCT GGTCCAGAAC CGTGTGGCGA TTGCCGAACC GACTCTCCCG
GACGACGTCA AGCGCCAGGG GGTGAACGTC CAGAAGCAAT CCACCTCCTT CATCCAGTTC
ATCGCGCTCA GCAGCCCCGA CGGCAGCCAC GACGATCTCT TCCTGAGCAA CTACGCCACC
TTGAACGTAC GGGACGAACT CAGCCGCATC GAGGGCGTCG GGAATGTTTC GGTGATGGGC
AGCGCCAGCT ACAGCATGCG CGTTTGGCTC GATCCCGAAA AGCTCAAGAG CCGGAGCCTC
ACCACGCAGG ATGTGGTCGA CGCGATTCAG GAGCAGAACG TCCAGGTCGC TGCCGGCCAG
ATCGGGCAAC CCCCGGCCCC GGCGGGACAG AACTTCCAGT ACACCGTCAC CACCCTGGGG
CGGCTGAGCG ACGTCGAGCA GTTCCAGAAC ATCATCGTCA AGACCACTGC CGACAGCCAG
GTGGGCGCGC GCATCACCCG GGTGAAAGAC GTGGCCCGGG TCGAGCTCGG GGGGCAGGTT
TACGATCAGT ATTTCCAGAT GCACGGAAAA CCCGCGGCCG GCATCGGCAT CTACCAGCTC
CCGGGTGCCA ACGCGCTCGA TGTCTCGACA AAGGTCAGCA AGAAGATGGC GGAGTTGAGC
AAGTCGTTTC CGGCCGGGGT GACGTATGAC ATCCCTTTCG ATACGACCCG GTTCGTGACC
GCATCCATAC ACGAAGTCTA CAAAACGCTG ATCGAAGCGG GCATCCTGGT ACTGATCGTG
ATCCTCGTGT TCCTCCAGGA CTGGCGGGCG GTGCTGGTGC CCGCAACCAC CGTGCCCGTC
ACCATCATCG GAGCCTTCGC CGCCATGGCG GCACTGGGTT TCACCGTCAA CATCCTCACT
CTCTTCGGTT TGATCCTCGC CATAGGCATC GTCGTGGACG ACGCCATCGT CATCGTGGAG
AACGCCGCTC ATCACATCGA ACGGGGGCTG CCTCCACGGG AGGCGACGAT CAAAGCCATG
GATGAAATCA TCGGTCCGGT GATCGGCATC ACGCTCGTTC TGATGGCGGT CTTCCTCCCC
ACGGCCTTTC TCGGGGGCAT CACCGGGCAG CTCTATCGGC AGTTCGCCCT CACCATCGCG
GCCACCGCCG TGATCAGCGC CATCAACGCC GTGACCCTGA AGCCCGCCCA GTGTGCGCTG
TGGCTGCGCA AGAACCCGGA GCACCGCAAC TTGTTCTTCC GCGGTTTCAA CGCCGTCTAC
AGCCGCTGCG AACATGTATA CTCCATTATG ATAGCCTGGA TGGTGCGGCA CACCGTTGCC
ATGCTGATCC TTTTCGCCGT GCTGATCGGA AGCGCCACGT GGGGATTCCT GGCCCTGCCC
ACCGGTTTTC TGCCGACGGA AGACCAGGGA TACGCGATTG CCAGTGTGCT GCTCCCCGAT
GCGGCTTCGC AGGAGCGTAC CCGGGAAGTT GTGGCAAAGA TGAACGACAT GATCGCGAAG
ACTCCCGGAG TGGTCGACTA TCTGACCGTC GGCGGCTACT CGGTGCTGGA CGGCACCGGG
GCTTCCAATG CGGCGGCATT CTGGATCATT TTCAAGGACT GGAAGGAACG CAAGGACCCG
AGCCTCTCCC AGGAGGCCAT TCTCGGCCAC CTGCGACGGC AGTTCGCGAC CATCGAGGAG
GGCATCGCTT TCGTTTTCGT TCCGCCGTCC ATCCAGGGAC TCGGGGTTGC GGGCGGTTTC
CAGATGCAGC TTCAGGACCG CGGCGGCACG GGGGGCGAGC AGCTCCAGGC CATTGCCCAG
GAGATGGTCG TGGACGGCGA AGCCCAGCCC GGCCTGCAGG CGCTCAATAC GACCTACCGC
TCCGGCATCC CGCAGCTCTA TGTCGATGTC GACCGCGTCA AGGTAAAGGC CCTGAACATC
CCTTTGAGCA GAGTGTTCGG CACGCTGCAG GCCTCTCTCG GTTCGGCATA CGTTAATGAT
TTCAACAAGT TCGGACGTAC CTACCAGGTC CGGGTCCAGG CCGATCGGCG ATTTCGCGCC
AGGTCCGAGG ACGTGGCCCA ACTGGAGGTT CGGAGCGACA ACGGCAACAT GGTCCCCCTG
GGCACGATGG TGGACGTGGA GGAAAGCCTC GGCCCCCTGG TCATCAATCG ATACAACCTC
TATCCGTCCG CTGCCGTCAA CGGTGAGGCC GCGCCCGGAT ACAGCTCGGG GCAGGCCTTG
AAGCTCATGG AACAGATGGC GGCCAACAAG CTGCCCCCCT CGATGAGCTT CGACTGGACC
GGGATGTCCT ACCAGGAGAA GAAAGTCGGG GGCGAGGCGT TCATGATCTT CGGCCTGGCG
ATCCTGCTGG TCTACCTGGT GCTGGCGGCC CAGTACGAAA GCTGGACGAA TCCCGCGGCG
GTCATCCTCG TGGTGCCCCT GGCCCTGCTG GGCACGGTCA TTGCCTTGGC GCTCACCGCC
ACGGACAACA ACATATACAC TCAAATCGGC ATCGTTCTCC TGATCGCCCT GGCGTCCAAA
AACGCGATTC TCATCGTGGA GTTTGCGCGG GAACTGAGAG CGGACGGCAA GGATCTCCTG
GACGCCGCGG TCCAGGCGGC CCGGATGAGG TTCCGGCCGA TCCTGATGAC CTCGTTTGCG
TTCATCATGG GCATCTACCC GCTGGTGCGG GCGGAGGGCG CCAGCGCAGC CAGCCGGCGG
GCGCTGGGTA CGGCGGTGTT CGGAGGCATG CTTGCTTCGA CTTTTCTCGC CGTCCTGTTC
GTGCCGGTCT TTTATGTGGT GTGGCAGCGG TTGAGCGAAT CCCTCGCCGG GTTCAAGAAG
AAGCCGGTTT CCGCCGATTC CGGCACACCT CCGGAATAG
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| Protein sequence | MLSRFFIDRP IFANVIAIVT IIFGLVTLLL LPVEQYPQIT PPTVLVSTVY PGASAEVVAD
TVAAPIEQQV NGVEHMLYMS SNSANDGSYS LTVTFEVGTN LDMAQVLVQN RVAIAEPTLP
DDVKRQGVNV QKQSTSFIQF IALSSPDGSH DDLFLSNYAT LNVRDELSRI EGVGNVSVMG
SASYSMRVWL DPEKLKSRSL TTQDVVDAIQ EQNVQVAAGQ IGQPPAPAGQ NFQYTVTTLG
RLSDVEQFQN IIVKTTADSQ VGARITRVKD VARVELGGQV YDQYFQMHGK PAAGIGIYQL
PGANALDVST KVSKKMAELS KSFPAGVTYD IPFDTTRFVT ASIHEVYKTL IEAGILVLIV
ILVFLQDWRA VLVPATTVPV TIIGAFAAMA ALGFTVNILT LFGLILAIGI VVDDAIVIVE
NAAHHIERGL PPREATIKAM DEIIGPVIGI TLVLMAVFLP TAFLGGITGQ LYRQFALTIA
ATAVISAINA VTLKPAQCAL WLRKNPEHRN LFFRGFNAVY SRCEHVYSIM IAWMVRHTVA
MLILFAVLIG SATWGFLALP TGFLPTEDQG YAIASVLLPD AASQERTREV VAKMNDMIAK
TPGVVDYLTV GGYSVLDGTG ASNAAAFWII FKDWKERKDP SLSQEAILGH LRRQFATIEE
GIAFVFVPPS IQGLGVAGGF QMQLQDRGGT GGEQLQAIAQ EMVVDGEAQP GLQALNTTYR
SGIPQLYVDV DRVKVKALNI PLSRVFGTLQ ASLGSAYVND FNKFGRTYQV RVQADRRFRA
RSEDVAQLEV RSDNGNMVPL GTMVDVEESL GPLVINRYNL YPSAAVNGEA APGYSSGQAL
KLMEQMAANK LPPSMSFDWT GMSYQEKKVG GEAFMIFGLA ILLVYLVLAA QYESWTNPAA
VILVVPLALL GTVIALALTA TDNNIYTQIG IVLLIALASK NAILIVEFAR ELRADGKDLL
DAAVQAARMR FRPILMTSFA FIMGIYPLVR AEGASAASRR ALGTAVFGGM LASTFLAVLF
VPVFYVVWQR LSESLAGFKK KPVSADSGTP PE
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