Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3877 |
Symbol | |
ID | 4457802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 4730952 |
End bp | 4731578 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639704650 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_847981 |
Protein GI | 116751294 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0377952 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGACC AGGATCAATC CAATCCGGCG CAGGGCGGCA CCGATGACGT CGCGCTGCTC GCGGAAAGAG CTCGGGACGG GGACGCGGCG GCCTTCGGTC GCCTGGTGGA TCTGTTCCAG GATGAGATTT TCCGGATGGT CTATTATCGG ACCCGGTCGC GCCCGGACGC GGAGGATTTG ACGCAGGACG TGTTTCTTCA GGCCTTCAAG AACCTGGGCA AGCTCAAGGA CTTCGACCGG TTCCGGGCCT GGCTGTACAG CATTGCGGTG AACCGGGTGC GTGACTTCTA TCGAAAGAAG CGATTGCTCT CGTTCTTTGG TCTGATGGGT GAAGAAGGAA GTTCCGAAGC TCCCGAGGAC AGGCCCGATC ACGGTCCCGG AGCGTTGGAG CAGCTTGTGA GAGAGGAATT CTGGGTGAGG GTGAGGCAAT TGTCGGAGAC ATTTTCAGGC GCGGAGCGCG AGGTTTTTTT TCTGAGATTC CTCGACAATC TCAGCATCAA GGAGATATCC CATACTCTCC ACAAGAGCGA GAGCGCGGTC AAAACCCATC TGTACCGGGC GCTCCAGAAG TTCAGGGATC ACTCGGAGGC GGGTGAATTT CTGGAAGGGG ATAGGACATG TCCGTGA
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Protein sequence | MSDQDQSNPA QGGTDDVALL AERARDGDAA AFGRLVDLFQ DEIFRMVYYR TRSRPDAEDL TQDVFLQAFK NLGKLKDFDR FRAWLYSIAV NRVRDFYRKK RLLSFFGLMG EEGSSEAPED RPDHGPGALE QLVREEFWVR VRQLSETFSG AEREVFFLRF LDNLSIKEIS HTLHKSESAV KTHLYRALQK FRDHSEAGEF LEGDRTCP
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