| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3302 |
|---|
| Symbol | |
|---|
| ID | 4458365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4042391 |
|---|
| End bp | 4044232 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639704074 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_847410 |
|---|
| Protein GI | 116750723 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.69725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGC AAACGGACAT GCAACCGGAC AGCCCGCCGG AAACCGCGAT CGACCTGGAC
GATCTGGGAG ACTGGCGCAA GACTCATTCG TGCAACAGCC TGGGACGCGG GCACGTGGGT
GAAACCGTGG TCCTGATGGG ATGGGTGCAA CGCAGGCGCG ACCACGGCGG GTTGATTTTC
GTGGACCTGC GAGACCGGGA GGGACTCACG CAGGTGGTCT TCGACCCTCA GTTCGACGCC
GTGGCCCACG AACACGCGCA TTCCCTGCGC AGCGAATACG TCATCGCCGT CACCGGCACG
GTGAGGCCGC GTCCGGAAGG AATGACCAAT CCCAGGCTGG TTACGGGAGA AATCGAGGTG
ATCACCAGGG AACTGAAGAT CCTCAATTCG TCCAAGACCC CTCCTTTTCA TGTCGAGGAC
GACGTCGAAG CCAGCGAAAA TATCCGCCTG CGGTACCGTT ATATCGATCT GCGCCGTCCA
AGGATGTTCC ACAACCTCCT TTTGCGGCAC CGGGCCGTCC AACTCACCCG GGAATACTTC
AACGGGGCGG GCTTCCTGGA AGTGGAAACC CCGGTCCTGA CGAAGAGCAC GCCTGAAGGG
GCAAGAGATT ACCTCGTGCC GAGTCGCGTC AATCCGGGCA AGTTCTACGC CTTGCCCCAG
TCGCCTCAGC TTTTCAAGCA GATCCTCATG GTGGCGGGTT TCGAGCGTTA CTACCAGATC
GTGAAGTGTT TTCGGGATGA GGACCTGAGA GCGGATCGTC AACCGGAATT CACCCAGCTC
GACCTTGAAA TGTCCTTCGT GAATGAAGAA CATATCTACG AACTCATCGA AAGCTGGATA
CGGCTCCTGA TGAAAGAGCT GCTGGGGGTG GAGATGGCGC CGCCGTTTCC GCGCATGTCC
TATGCGGAGG CCATGCGATT GTATGGAACC GATCGACCGG ACACGCGCTT CGGCTTGTTG
TTGACGGACG TCACCGACAT CGTGGCGGAT TCCGAGCTGC GCGTGTTCCG GCAGGCGGTC
GAGCGAAACG GGATCGTGAA GGCGCTCCGG GTGCCCGGAG GGGGAGGTCT GTCTCGAAAG
GATCTGGACG ATCTGACCGA ATACGTGAAA ATATTCGGTG CCCAGGGCAT GGCCTGGATC
AGGATTCAGC CGGAGGGATG GCAATCCCCG ATCGCCAAGT TTCTCCAGGA GAGCGTACGC
GAACGCCTGG CGGAAAGGCT GGAAATCGAG AACGGCGACA TCGTCATGTT CCTTGCCGAC
CAGGGCAAGG TGGTCAACGA CGCATTGGGA AATCTGCGGG TTCGGCTCGG AAATCAGCTC
GAACTCATTG ACCCCGGGAG CTATAATTTT GTTTGGGTGT CGCATTTCCC GCTGCTCGAA
TGGGATGCGG AGGAGAAGCG TTACACGGCG GTCCATCACC CGTTCACGTC GCCGATCGAG
GAAGACGTCC CGCTTCTGCG GGAACATCCC GAGCAGGTGA GGAGCCGGGC CTACGACCTG
GTGCTCAATG GTATCGAAAT CGGGGGCGGG AGCATCCGCA TCCATCGCCA GGAGCTCCAG
GAGCTTGTGT TCGGTGCGCT GGGCATCGGT CGCGAGGAGG CCGCGGAGAA ATTCGGCTTT
CTTCTGGAAG CGCTTCAGTA CGGGGCGCCG CCCCACGGTG GGATCGCATT CGGCGTGGAC
AGGCTGGTCA TGCTGTTGAG CGGTTCCACT TCGATCCGGG ACGTGATCGC TTTTCCGAAG
ACGCAGAAGG CGACCTGCCT GATGAGCGGG GCGCCGTCGG AGCCGGAGTT GCGGCAACTC
CTGGAGTTGT GCGTGAGGGT TGAAAGCGAA CGGAGGAGTT GA
|
|---|
| Protein sequence | MEPQTDMQPD SPPETAIDLD DLGDWRKTHS CNSLGRGHVG ETVVLMGWVQ RRRDHGGLIF
VDLRDREGLT QVVFDPQFDA VAHEHAHSLR SEYVIAVTGT VRPRPEGMTN PRLVTGEIEV
ITRELKILNS SKTPPFHVED DVEASENIRL RYRYIDLRRP RMFHNLLLRH RAVQLTREYF
NGAGFLEVET PVLTKSTPEG ARDYLVPSRV NPGKFYALPQ SPQLFKQILM VAGFERYYQI
VKCFRDEDLR ADRQPEFTQL DLEMSFVNEE HIYELIESWI RLLMKELLGV EMAPPFPRMS
YAEAMRLYGT DRPDTRFGLL LTDVTDIVAD SELRVFRQAV ERNGIVKALR VPGGGGLSRK
DLDDLTEYVK IFGAQGMAWI RIQPEGWQSP IAKFLQESVR ERLAERLEIE NGDIVMFLAD
QGKVVNDALG NLRVRLGNQL ELIDPGSYNF VWVSHFPLLE WDAEEKRYTA VHHPFTSPIE
EDVPLLREHP EQVRSRAYDL VLNGIEIGGG SIRIHRQELQ ELVFGALGIG REEAAEKFGF
LLEALQYGAP PHGGIAFGVD RLVMLLSGST SIRDVIAFPK TQKATCLMSG APSEPELRQL
LELCVRVESE RRS
|
|---|
| |