| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3254 |
|---|
| Symbol | |
|---|
| ID | 4458422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3984508 |
|---|
| End bp | 3986193 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639704026 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_847362 |
|---|
| Protein GI | 116750675 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGA AGAAGAGATT AACGCCGCCG GACGGTGAGA AGCGCTCCCG GCCGAGCGAC
AGCGAAGTTG ACCCGGCCGC CGCCCGCCCC CCTGCAATGG AGGATATCGG GGAAGGACTG
CGGACAGGCT GGAACTATTA CACGAACATT CTCGAGTGCA TGAACGACGG CGTTTTCATC
ATCGATTCCG ACTTCAACAT CCAGTATCTC AACAAGGCGG CCGAACGCGT CTTTGGAACT
CCCCGGAACA GAAAGTGTTA CGAGTACTTT CACAATCGGA ATACCCCCTG CTATCGGTGC
CGTATCGACG CGGTATTCAG CGGGAAGACG GTGCGGCGCA TGAAGAACTA CCCGCGCATT
GGAAAGATCC ATGAAGTTTT TGAAACGCGT CTGACGAATC CCGACGGCAG CTATGCCAAG
CTTGGAATCG TCCACGACAT CACCGACTTC ATGCAGGTCG AGGAAGCCTT GCGGCTCGAC
GAAGCGCGTT TTGAAGCCCT TTATCGGCTG GGCCACATGG CAGAGGCGCC GATAGACGAG
ATCGCCGGTT TCGCGATGGA ACAGGCGGTG AAGATCACTC GCAGCAGATT CGGTTTCCTT
GGTTTCGTGA GTGAAGACGA GACGATATTC ACCCGGCACG CCACTTCGGG AACGGCCATG
AAGACCTGCC GAGTGAGCGG GAACCAGGCA CGGTTCCAGG TGGATGAAGC GGGGGTATGG
GCGGACGCGA TCCGGGAACG AAGGCCGATC ATCATCAACG ACTATAAATC ATATCGGGGA
AGGAAGGGCA TTCCCAAAGG CCACGTGCCG CTCAAACGCA TCATGAGCGT ACCGGTGCTG
GACGGCCGGC GGGTTGTCGC GCTGGGCACG GTGGCGAACA AGGACGCGGA GTACAATGGA
GCGGACGTTC GCCATCTCGC GCTGCTCATC GATACGATGT GGCGGATGGT CCAGCGCAAG
GAAGCGGAAC GCAACCTGCG CGTGTCCGAA AGCCAGCTCC GCGTCCTGTC CTCCAAGCTC
CTGACGGTTC AGGAGGAAGA ACGGGCGCGG CTTGCTCACG AGCTCCACGA CAGCATCGGC
CAAACCCTGG TGGCGGTCAA GTTCGGCATC GAGAACGCGC TCAAAGGGAG GACCGTGGGT
GGCCTCGACG CCGTGTCGCA GCTCCTCGAC CCCCTGGTGC CCATGGTTCA GAATGCAGTG
GAGGAAGCCC GAAAGCTGTA CATGGGACTG CGGCCCACCA TTCTGGACGA TTTCGGGGCG
ATCGCGGCGA TCGGGTGGTT ATGCAGCGAG TTCGAAGAGA CGCATACGGG CATGCTCGTG
GAGAAGACGG TGGACATTGA CGAGGAGCAT ATCCCGATAC CCGTGAAAAT CGTCCTCTTC
AGGACCGTTC AGGAAGCACT CAACAATGCG GCCAGGCACA GCGAGGCCAC CCGGGTGGGG
CTTTTCCTGA AGAAGGAGAA ATCAGGCATA ACGCTGGTCC TGGAGGACAA CGGGATTGGT
TTCGACAGCT CGCGCTATTT GTCGGGAGCG CAGGGAACGG GGCTGGGAAT CGTGAGCATG
AAGGAACGTA TCGAGTTGTC GGGAGGAACC TTCTCCATCG AGTCGCAATC GGGAGCGGGA
ACCGCAATCC GTGCGTTCTG GCCGGATGAG TTCAGGCTGA AACTCTCACC CGATTTTCAC
CTCTGA
|
|---|
| Protein sequence | MQKKKRLTPP DGEKRSRPSD SEVDPAAARP PAMEDIGEGL RTGWNYYTNI LECMNDGVFI
IDSDFNIQYL NKAAERVFGT PRNRKCYEYF HNRNTPCYRC RIDAVFSGKT VRRMKNYPRI
GKIHEVFETR LTNPDGSYAK LGIVHDITDF MQVEEALRLD EARFEALYRL GHMAEAPIDE
IAGFAMEQAV KITRSRFGFL GFVSEDETIF TRHATSGTAM KTCRVSGNQA RFQVDEAGVW
ADAIRERRPI IINDYKSYRG RKGIPKGHVP LKRIMSVPVL DGRRVVALGT VANKDAEYNG
ADVRHLALLI DTMWRMVQRK EAERNLRVSE SQLRVLSSKL LTVQEEERAR LAHELHDSIG
QTLVAVKFGI ENALKGRTVG GLDAVSQLLD PLVPMVQNAV EEARKLYMGL RPTILDDFGA
IAAIGWLCSE FEETHTGMLV EKTVDIDEEH IPIPVKIVLF RTVQEALNNA ARHSEATRVG
LFLKKEKSGI TLVLEDNGIG FDSSRYLSGA QGTGLGIVSM KERIELSGGT FSIESQSGAG
TAIRAFWPDE FRLKLSPDFH L
|
|---|
| |