Gene Sfum_3090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3090 
Symbol 
ID4458570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand- 
Start bp3799081 
End bp3799737 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content57% 
IMG OID639703861 
ProductTetR family transcriptional regulator 
Protein accessionYP_847198 
Protein GI116750511 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.595832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones2 
Fosmid unclonability p-value0.000923351 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCCTC GCGATACGTT CAAGAATCTT GAGAGCCGGA AGAAGGACCG CATTCTGGAT 
TCGGCCATCG AAGAGTTTGC CGACCAGGGG TTCCGACAGG CCAGCATCAA TCGGATCGTT 
CGGGAGCTCG GCATCGCCAA GGGTTCCATC TTTCAATACT TCGGCAGCAA AGAAGGCCTG 
TTTCATTTCG TTTTCGATCA CGCCGTGGAC CTGGTGAGGC GTTCGCTGCG CCAGGTGAAA 
CAGGAAACGA CCGAAACCGA TTTCTTCGAG CGCATCAGGC GAAGCATCCT TGCCGGAATT 
CAGTTCATAC GGCGTCATCC CAGAGTTTAT CGCATCTATC TCAAGATGAT CTTCCAGGAG 
GACTTCCCGC TCCGGGCCGA ATTCCTCCAG CAGGTCCACC TGTTTTCCGG AGAGTACCTG 
AGACCGCTGG TGGAAGCGGG TATTGCCCGT GGCGAGCTGC GGCCCGACCT GAACGTCGAG 
ATGAGCGTGT TCTTTCTGGA TGCGCTCATG GACCGGTTTC TGCAGGCTTA TTGCGTCTCG 
TTCCTGGACG CCGGAGCGGG ATTGTACCAG GCGGACGAAG GGGAAGTTGA CAAGCGCGTG 
GACGAATTCA TCCGGCTGCT CAGAAACGGC ATGGGATCGA GAATACCCGG GGAGTAG
 
Protein sequence
MNPRDTFKNL ESRKKDRILD SAIEEFADQG FRQASINRIV RELGIAKGSI FQYFGSKEGL 
FHFVFDHAVD LVRRSLRQVK QETTETDFFE RIRRSILAGI QFIRRHPRVY RIYLKMIFQE 
DFPLRAEFLQ QVHLFSGEYL RPLVEAGIAR GELRPDLNVE MSVFFLDALM DRFLQAYCVS 
FLDAGAGLYQ ADEGEVDKRV DEFIRLLRNG MGSRIPGE