Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3007 |
Symbol | |
ID | 4458662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 3708266 |
End bp | 3710635 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639703779 |
Product | leucine-rich repeat-containing protein |
Protein accession | YP_847116 |
Protein GI | 116750429 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.165879 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATGG GAGTGAGAGC CTTCTTGTTC GTCCTGGTCC TTCTTGTCTC CGTGCCGGGG TCCGCCCCGG CCCAGGAAAC CGTTTCGCGC GCGCCGGGCA TCGTTGACAT CGGGGAACCG CTGTCCTTCA TCGAGTTCGA GCAGGCCTAC GGCGACAACA AAGAACTACC GAGGACCGAC GAGGATGTCC TGGCGCTCGC CCGGCGCCTG TTCCACGATC CCGAACAGGA GGCGCTTCTC GAGGTGCGGC AGCAGGGGTT GGAGCTCTGC GGCTCCTACG ACCTGCAACT GCTGCTCACC GCCCTGAAAA ACCCCGCCAT ATCGGAAGCC GCCCGCGAAA CCGTCCGGCG GATCATCGAA CGGGAAGACG CAGTCCCTTA CAAGCAGGCG ACCAGGAAGC ACTTCAGGTT CTACTACCGG GACAACCATC CCGACCCGAA ATATAACGTG ACGTTGCGGG ATGTTGAAGC CGCCGCCGAG ATCCTGAACC GTCTCTGGTA CAGGTATTCC CGAGATTTCA GGACTCCGCT GAACTACATC TCGACAATCG ATCCGGTCGG CCGCCGGATG ATCGATATCC TCATAAGGCC TCTCCCCGGT TCGGTGGGAG GCATGACCAG CCCCGACAGC CCGGTGATCC AGCTCGCTCC CTGGGGGATG AAAGACGAAT GTTTCCGGAA GGAAATCTGC GCTCATGAAT TATTCCACCG CGTACAGTTC TCTTACGGAT GGCACGGGGA ATCATCCACC AGGTGGCTGC TGGAAGGGTC GGCCACCTGG TCCCAGAAAT ACGCCTATCC TCAGGAGCAT GCTTACATGC GCTGGATGAA CAGGGGACTG TCCACACCAA ACGTCGACCT GACGACTCGC GCCTATGACG CCTGCCACCT GTGGGTTTAC CTGGCGGAGC GGGCCGGGTG GAGTGCAATC CGGCAGTTGT GGGCCAATTA CAAGGAACAC GGTCCCATGG AGTCGCTCGA CCTGGTGACC GCCAGGAGGC TGGGCCTGAA CTTCGAAGAA TTTCTGACCC AGTGGATGAA GGCCAATTAT GTCAAGGACA CCGCGAACGC TCCCCCCAGG TACGAGTACG AAGAGGACGA TGAGCCGGGC CTCAATTGCG GGCGCGAGTA CGGCCCCTTG AGGCATGTCG ACAAGAACTG GATGAAACCG GTAACCAGGT TCACGATCAC CGTCAATGCC GGCGGAACGC TGCAAGCCTT CGGCGCCCAC TACTATGTTT TCCCGCTGGA CCCCTCCGTT ACGGAATTCA CCTTCAAGCT CAAAGGATCG GAGAGCGGCG TTTTTCGCTA CTATGTGCTG GGCACGAAAG ACAACCTGGG CGTGGCCGCG TATAACGGGG AGGGCTCGAG CTTCAGCATC CATAAGAAGC TTGCCGAGAA CGAATGGGAC CAAGTGGCGG TCGTCGTGAT GGCCTTGATG TTCGGCGGCG ACTACACCCT CGTTTATAAC GGGGACCTGC CGGTCGCGTT TCCCGACCCC GTGCTCAGGT CCATCGTCAG GAAAGCGATC GGAAAACCCA CGGGGCCCAT TCTGAAGAGC GACCTGATCC GGTTGGAGTC GATCGACGAC TGGGGCTACG ACGGCAAGAT CAGCAATCTC TCGGGTCTCG AGTATTGCGG CAACCTTCAA TCGCTGCAGC TCCCGAATCA TCTCATAGCG GACGTCGCAC CCCTGGCCCG CCTCAGGAAA ATCACTCAAC TCAACCTGAC CCGCAATCAA GTGGCGAACC TGCGGCCGCT TCGGTTCCTG GATGAGTTGA AGAGCCTCGA GCTATACGAC AACCAATTAA TTGACATCTG GCCTATCCAG TGGTGCAAGA AGCTGATTGT ACTCGACCTG GGCCGCAACC GGATTCAGTC GGTGGAAACG CTCGAAAATC TGATCGATCT CACCTATCTC AGCCTCGACC AGAACCGAAT CGGTAACATC AGCCCCCTCT CCGGCCTGGC GAAGCTGAAG GAACTGAATT TGAGCGGCAA CCTCATCCAA AGCCTGGAAC CGCTTTTCAT GTTGACCGGC CTGCTCAACC TTCACGCCTC CGACAACCGG GTCTCGACGG CCGCAGGACT GCAATCCCTG TCCAACCTCG TGGTGTTGAG TCTCGCCCGC AACCCGGTCG CGGATATATC CGATCTTGCG TTCCTCCACG ACATCGGAAG CGTGAACCTC GATTCCACCG AGGTCGAGGA CATCCAGCCG CTGGTGGACA ATCCCGGGTT GGGCATGAAC GATTACGTCT GGCTGCGCGA TACCGGTCTG AGCCACAACT GCGACCCGGC GAAAGGAGAC GTCAAGGACT GCAAGGACGT TGAAACCCTG AAAAACCGCG GGGTTTATGT GGGCTGGTGA
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Protein sequence | MAMGVRAFLF VLVLLVSVPG SAPAQETVSR APGIVDIGEP LSFIEFEQAY GDNKELPRTD EDVLALARRL FHDPEQEALL EVRQQGLELC GSYDLQLLLT ALKNPAISEA ARETVRRIIE REDAVPYKQA TRKHFRFYYR DNHPDPKYNV TLRDVEAAAE ILNRLWYRYS RDFRTPLNYI STIDPVGRRM IDILIRPLPG SVGGMTSPDS PVIQLAPWGM KDECFRKEIC AHELFHRVQF SYGWHGESST RWLLEGSATW SQKYAYPQEH AYMRWMNRGL STPNVDLTTR AYDACHLWVY LAERAGWSAI RQLWANYKEH GPMESLDLVT ARRLGLNFEE FLTQWMKANY VKDTANAPPR YEYEEDDEPG LNCGREYGPL RHVDKNWMKP VTRFTITVNA GGTLQAFGAH YYVFPLDPSV TEFTFKLKGS ESGVFRYYVL GTKDNLGVAA YNGEGSSFSI HKKLAENEWD QVAVVVMALM FGGDYTLVYN GDLPVAFPDP VLRSIVRKAI GKPTGPILKS DLIRLESIDD WGYDGKISNL SGLEYCGNLQ SLQLPNHLIA DVAPLARLRK ITQLNLTRNQ VANLRPLRFL DELKSLELYD NQLIDIWPIQ WCKKLIVLDL GRNRIQSVET LENLIDLTYL SLDQNRIGNI SPLSGLAKLK ELNLSGNLIQ SLEPLFMLTG LLNLHASDNR VSTAAGLQSL SNLVVLSLAR NPVADISDLA FLHDIGSVNL DSTEVEDIQP LVDNPGLGMN DYVWLRDTGL SHNCDPAKGD VKDCKDVETL KNRGVYVGW
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