| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2837 |
|---|
| Symbol | |
|---|
| ID | 4458835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3498831 |
|---|
| End bp | 3500981 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639703611 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_846950 |
|---|
| Protein GI | 116750263 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAACCGC ACGATCGAAA CGGCCTGGAC GTGCCGGCGT GTCCGGCGGA CACGGGCGGG
CGGAGGCCCC GGCATCCGGC TTTTTTCATG AACCCCGTTG ACGCTCGACA GGCTCGCATG
GAAGGACAAT TCGTACGGCA ACGAAGGCTC GCAGCGGTGG TCGCAAGCCT GCTGATCCTT
GCGGCGCTGT TTGTGGTGAG CCGGTTCAAT TACCTGCTGT TTCACAGCCT GGCGGAAATG
TTCAGTGTCG TGATCGCCTG CTCGATTTTC GTCGTCGCCT GGAACTCCCG CCATTTCCTG
AACAACGGCT ATCTTCTCCT TATCGGCATC GCCTATCTGT TCGTGGGCAC GCTGGACACG
CTGCACATGC TCTCCTACAA GGGCATGGGA GTGTTCCCGG GCGATTCGGC CGACACTCCC
ACGCAATTGT GGATCGCCTC CCGCTACATG GAAAGCATCG CCCTGCTCGT CGCGCCGACT
CTGATGACCA GGCGGATCGA CGCGGGGCGC GTCTTCGGAT GGTTCCTCGC CGCCACGGGA
ATCCTGCTGT TCGCCATCTT TCCCGCGAAC GTCTTCCCCG TATGCTACGT CGAGGGGGTT
GGCCTGACGC CGTTCAAGAA GGCGAGCGAA TACATCATCT GCCTCACCCT GGCCGCGGCC
ATCGTGCTGC TGCTGCGACA GCGGCGGTTT TTCGACCCCG GAGTCCTGCG GCTGCTCGTG
GGGTCCATCG CTGCGGCCAT TGTCTGCGAG CTGGCCTTCA CCTTCTACGT CGGCGTCTAC
GACCTTTCCA ACCTGACCGG TCACTTCTTC AAGATCATCT CGTTTACGCT GACCTACAAG
GCCATTGTCG AGACCGGCCT CGTGAAACCC TACAACCTGC TGTTTCGGGA TCTGAAACTC
GGTGAAGCGG CCCTGCGCGC CGCCAACGAC CAGCTCGAAA ACAAAGTGCG CGCCCGCACC
GCCGAGCTCA GTGAAGCCAA TGAGGCGCTG GCATCGGAAG TTGTTGAGCG CAAGCAGGCC
GAGGCGGCCC TGCGCCGAAG CGAGCTCAAG TACCGGGAGC TCGTGGAGCA TGCCAACAGC
ATTATCCTGC GCCTGGACGC ACAGGGGAAG ATTCTCTTCT TCAATGAATT CGCCCAGAAC
TTTTTCGGTT TCCGCGAAGG CGAAATCCTC GGCAGGCAGG CCGTGGGAAC GATCGTGCCG
GAAACGGAGA CCTCCGGTCG AGACCTCGCC TCGATGATGC GCCGCATGTT GTCCGACCCG
GAAGTGTATT CGAGCAACGA ATATGAAAAC ATGCGCAGAA ACGGCGAGCG GGTGTGGGTG
GCCTGGACGA ACAAGGCGAT TCGCGACGGG AACGGCCGCA TCGCGGAGAT CCTGTGTATC
GGCAACGACA TCTCGGCGCG CAGACGCATC GAGGAAGAGC TCGAACGGAG CAACAGGGAA
TTGCAGGAAT TCGCCTTCAT CGCTTCCCAC GATCTGAAGG AGCCGTTGCG CAAGGTCATG
GCGTTCGGCG ACCGATTGCA CAGCCGGTTC GGCGAGCGGC TCGACGAGGA CGGCCGCGAT
TACCTGGCCC GGATGCGCAA GGCGGCGTTC CGCATGCAGA ACCTGATCGA ATCGCTCCTC
AACTATTCGC GCGTGACCAC GAAGGCGGAG ACTTTCTCCA CCGTGGACCT GAACGTTCTG
ATCAAGGAAA TTTTGAGCGA CCTGGAGACC TCCATCGCGG AGAACGGCGT GCGCATCGAA
GTCGAGCGGC TGCCGATCAT CCAGGCGGAT TCGAACCAAA TGCGCCAGCT TTTTCAGAAC
CTCATCTCCA ACGCCTTGAA GTACCATGGA ACGGAAGCGC CCTTCGTCGG GATCCGCGGG
AAGAAGGCCG CCCCGACGCC GGGCGGGACC GGATCGGGCG GACCTTCGTG GTATCAGGTC
CTGGTGGAGG ACAACGGTAT CGGGTTCGAT GAGAAATATC TCGACCGCAT CTTCGCGCCT
TTTCAGCGTC TGCACGGGCG GGACGCCTAT GAAGGCACGG GAATGGGCCT GGCCATCTGC
AGAAAGATCA TGGAACGGCA TGGCGGCACC CTCACGGCAA ACAGCACGCC CGGGCGGGGC
TCCACCTTCA TCGTGACCCT TCCCGCCAGG TCGGTCCGCT CCGCCCCGTG A
|
|---|
| Protein sequence | MQPHDRNGLD VPACPADTGG RRPRHPAFFM NPVDARQARM EGQFVRQRRL AAVVASLLIL
AALFVVSRFN YLLFHSLAEM FSVVIACSIF VVAWNSRHFL NNGYLLLIGI AYLFVGTLDT
LHMLSYKGMG VFPGDSADTP TQLWIASRYM ESIALLVAPT LMTRRIDAGR VFGWFLAATG
ILLFAIFPAN VFPVCYVEGV GLTPFKKASE YIICLTLAAA IVLLLRQRRF FDPGVLRLLV
GSIAAAIVCE LAFTFYVGVY DLSNLTGHFF KIISFTLTYK AIVETGLVKP YNLLFRDLKL
GEAALRAAND QLENKVRART AELSEANEAL ASEVVERKQA EAALRRSELK YRELVEHANS
IILRLDAQGK ILFFNEFAQN FFGFREGEIL GRQAVGTIVP ETETSGRDLA SMMRRMLSDP
EVYSSNEYEN MRRNGERVWV AWTNKAIRDG NGRIAEILCI GNDISARRRI EEELERSNRE
LQEFAFIASH DLKEPLRKVM AFGDRLHSRF GERLDEDGRD YLARMRKAAF RMQNLIESLL
NYSRVTTKAE TFSTVDLNVL IKEILSDLET SIAENGVRIE VERLPIIQAD SNQMRQLFQN
LISNALKYHG TEAPFVGIRG KKAAPTPGGT GSGGPSWYQV LVEDNGIGFD EKYLDRIFAP
FQRLHGRDAY EGTGMGLAIC RKIMERHGGT LTANSTPGRG STFIVTLPAR SVRSAP
|
|---|
| |