| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2736 |
|---|
| Symbol | |
|---|
| ID | 4458930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3377107 |
|---|
| End bp | 3379173 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639703507 |
|---|
| Product | squalene-hopene cyclase |
|---|
| Protein accession | YP_846849 |
|---|
| Protein GI | 116750162 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1657] Squalene cyclase |
|---|
| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAA TCAGGGGCAA GAGAGGAAGC GCGGCGGATT TCCTCGAAGA AGAGTATCAG
TGGGAGAATC TTGCTGACCA TGGCGAATCG GGGCGCACTC CCGGAGGCGG TCATCCGGCC
GCGTTGAAGG AGTACGAGGC CGGGAGCGCA ACGGAGCACA CCGGTCATCA CTGCGTTCAT
CATCTGGGGG TGCGGAATTC ATGGTTGCGA AAGATCGAGA AGGCCATCGA CAATGCGTGC
GGTCAGCTTT TCAAGACTCA ATATGAAGAC GGGTACTGGT GGTCGGAACT GGAATCGAAC
GTCACGATCA CCAGCGAGTA CATCATGCTG CTCTACCTTC TGGAGGTGAG CAGGCCCGAG
CAGCAGAAAA GCATGGTGAA ATACCTGCTC AATCAACAGC GGCCCGACGG TTCGTGGGGA
TTGTACTACG GAGACGGCGG GAATTTGAGC ACCACGATCG AGGCCTATTT CGCGCTCAAG
CTTGCGGGTG AGCACTGCGA GTCGGAGCCG ATGAGGAGGG CCCGCGAATT TATTCTGTCC
AAGGGCGGCA TCGAGTCGGC GCGGGTATTC ACGAAGATCT GGCTGGCGCT TTTTTCTCAG
TACGACTGGG ACAAGGTGCC GTCCATGCCC GTCGAGCTGG TGTTGCTCCC AAGCAGTCTG
TATTTCAATA TTTATGAGTT TTCGAGCTGG GCCAGAGGCA CGGTGGTTCC GTTGTCCATT
GTGATGTCCA TCCGGCCGCG TTGTCCGTTG CCCGCAAAGT GTTCGATCAA GGAGCTCTAC
GTCCCGGGCA GCAAGCACAA GAATTTCGCA TCGTGCACGC ACAAGCTGTT TTTTCTTTTC
GACCGTATTG CGAAGGCGTT TGAGCGGCGC CCGGTTCCTT CCTTGCGGAA CAAGGCGGTG
CAGGCGGCGG AGACCTGGGT TTTGGATCAC CAGGAGGACA GCGGAGATTG GGGCGGGATA
CAGCCGCCGA TGGTCTACTC TGTCCTGGCG CTGTACTACC TGGGGTACCC GCTGGATCAC
GAGGTCATCG TCAAGGGAAT AAAGGCGCTT GACGCCTTCT GCATGGAAGA CGAGGAGGGA
ACGCGGATGC AGTCCTGTGT TTCTCCCGTC TGGGACACGG CCCTCACCGT TCTGTCCATG
CTCGACGCAG GCGTCGCTGC GGAACACCCC GGCCTGGAAA AAGCGGGAAG GTGGCTTTTG
GAGAACCAGG TTCTGACGGG TGGAGACTGG CAGATCAAGA ACGATAGTCT TCCGGGCGGA
TGGGCGTTCG AATTCTACAA CACCCGCTAT CCCGACGTGG ATGATTCCGC GGTTGTGCTG
AGCACTCTGA ACCGCTTCAA TGCGGAGCGG GTCGAAGGGC TGGAATTCGC CAAGTGCAGG
GGCATGGAAT GGTGCCTCAG CATGCAGAGC TCCAATGGAG GATGGGCCGC CTTCGACAAG
GACAATACTC TCGAGATCCT CAATCGCATT CCTTTTGCCG ACCAGGAAGC GATGGTTGAT
TACCCCACCG CCGATGTTAC AGGCCGGGTG CTCGAAGCCA TGGGATATCT CGGATACGAC
GGTTCACACC CGCGGGCGCG AAAGGCAATC CAATTCCTGA AGAAGCGCCA GGAACGCGAC
GGTTGCTGGT GGGGACGCTG GGGCGTCAAC TACATCTACG GCACTTGGTC CGTCCTCAAG
GGGCTGATAT CCATCGGCGA GGACCCCAGG GCGGCTTACA TCAGGGCGGC TGTGCGCTGG
GTGAAGGATC ACCAGAATTC GGACGGCGGG TGGGGAGAGA CCTGTGAGAG TTACGAGAAC
CCTGAACTGC GCGGTCAGGG GCCGAGCACT CCCTCCCAGA CCGCCTGGGC CCTGATGTCG
CTGATCGCCT GCGGGGAAAT GAAATCTCAG GAAGCCAGCC GCGGGATTCA GTATCTGCTC
AGAACGCAGA AACGGGACGG CACTTGGGAG GAACTCCATT TTACGGGAAC GGGCTTTCCC
AAGCACTTCT ACATCCGCTA CCACAATTAT CGGAATTGTT TCCCCCTGAT GGCTCTGGGG
CAGTATCTGC GGGCTCTTGA GCGGTAA
|
|---|
| Protein sequence | MNPIRGKRGS AADFLEEEYQ WENLADHGES GRTPGGGHPA ALKEYEAGSA TEHTGHHCVH
HLGVRNSWLR KIEKAIDNAC GQLFKTQYED GYWWSELESN VTITSEYIML LYLLEVSRPE
QQKSMVKYLL NQQRPDGSWG LYYGDGGNLS TTIEAYFALK LAGEHCESEP MRRAREFILS
KGGIESARVF TKIWLALFSQ YDWDKVPSMP VELVLLPSSL YFNIYEFSSW ARGTVVPLSI
VMSIRPRCPL PAKCSIKELY VPGSKHKNFA SCTHKLFFLF DRIAKAFERR PVPSLRNKAV
QAAETWVLDH QEDSGDWGGI QPPMVYSVLA LYYLGYPLDH EVIVKGIKAL DAFCMEDEEG
TRMQSCVSPV WDTALTVLSM LDAGVAAEHP GLEKAGRWLL ENQVLTGGDW QIKNDSLPGG
WAFEFYNTRY PDVDDSAVVL STLNRFNAER VEGLEFAKCR GMEWCLSMQS SNGGWAAFDK
DNTLEILNRI PFADQEAMVD YPTADVTGRV LEAMGYLGYD GSHPRARKAI QFLKKRQERD
GCWWGRWGVN YIYGTWSVLK GLISIGEDPR AAYIRAAVRW VKDHQNSDGG WGETCESYEN
PELRGQGPST PSQTAWALMS LIACGEMKSQ EASRGIQYLL RTQKRDGTWE ELHFTGTGFP
KHFYIRYHNY RNCFPLMALG QYLRALER
|
|---|
| |