Gene Sfum_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2209 
Symbol 
ID4459510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2707608 
End bp2710142 
Gene Length2535 bp 
Protein Length844 aa 
Translation table11 
GC content60% 
IMG OID639702975 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_846326 
Protein GI116749639 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGATA GGGTCCTCCC ATATTTGCCC GACGATATCT CCAATAAGCA GATCCCCATC 
CTCGTGGTGG ACGACCTTCG GGACAACCTC GATCTCATGG AAGCCCTGCT GGTCAGCGAA
GGATTCGAAG TCGTTCATTT GATCCCCTCG GGCCAGGAGG CGCTGGAGTT CCTGGAAACG
CACCGCGACA TCGGCGTCAT ACTGATGGAC ATGATGATGC CCGGGATCGA CGGTCATGAA
ATGTGCCGGC GAATCACCAC CCACGAATCG ACCCGCCACA TACCGGTCAT CATCGTGACG
GGAGGGGCGT TGCGGCACAA CGAAGCCGTG CAGAAAAGCT TCGCCGCGGG AGCCGTCGAT
TTCGTCACCA AGCCCATCAA CGAAGTCGAA TTGTTCATGC GCATCCACTC CGCGCTGGCC
CTTTACAGGG AACGCGTGAT TCGCCACCAC AAAACCCGCG AGCTGCGGGA GAGCGAAGAA
AAATTCCGGG TCACCTTCGA CCAGGCACCG GTCGGCATCG CCCATGTCAA TGCGGACGGC
CGTCTTCTGC TCATCAACCG GCGCCTGTGC GAAATGCTCG GGTTCCAGGA ACGGGAGCTG
ATCGAGTCCT CCTTCCCGGA CCTCTGCGTA CCCGAGAACA GGGACGTTCA CGAACGCGAG
CTGAAAAAGT CCGTCGAACA AGGACTCGAA TATCACGGCT TCGAAATTCC CCTGGTCCAT
AAGGACGGCA GGATCATCTG GACCAAGCTC ACCCTTTCTC CCATGAAAGA CGCGGCGGGC
GTCCCCAAGT ACTTCATACA CATTGTGGAA GACATCACCG AGCGCAAGAA TTTCGAGGAC
AATCTCCGCC TGTCCGCCAC CGTGTTCGAG GGGAGCACGG AAGCCATCAT CATAACCGAC
GCCCGGGCCA ACATACTCAG GGTCAACAGC GCCTTCACGG CCATGACCGG GTATGCCGAT
CACGAAGTGG TGGGGAAGAA CCCACGCCTC CTGAAATCCG GAAATCACCA CGAGGAATTC
TACCGCGCCA TGTGGGCCAC GCTGAGCAGC ACCGGGCAGT GGCAGGGCGA GATCTGGAAC
CGTCGGAAAA ACGGCGATAT TTTCCCCGCC TGGCTGACCC TGTGCGCCGT GCGCAACAGC
GAGGACAAGA TCACCAATTA CGTGGGAATC TCCAGGGACA TCACGCTGCG CAAGGAAGCC
GAAGAGCGCC TCAGCTACCA GGCAAGCCAT GATGCCCTCA CCGGGCTGCC CAACCGGGCG
CGGTTTCACG ACCGCCTGAC CCACGCCCTG GCGCGAGCCG GCCGCGACCG GCACGAATTC
GCCATCCTGT TCCTCGACCT GGACCGTTTC AAAGTCATCA ACGACACACT GGGGCACACC
GTGGGCGACT TTCTCCTGCA GGGGGTCACC AAGCGGCTGC TCGGAGGCAC CCGGGAATCG
GACACCCTTG CCCGGTGGGG CGGCGACGAG TTCATCATCC TCCTGGAGAG CATCCGCGGA
GCCGAGGATG CGGCCGTGGC CGCGCGAAGA ATCCTCGACG TCCTGGCCGA ACCTTTCAGC
GTCCAGGGCC ACGAAGTGTT CGTCAGCGGC AGCATCGGGA TCAGCGTCTA CCCAAGGGAC
GGCGAGGACG TCCAGGCCCT GCTCCGATGC GCCGACATCG CGATGTACAG GGCCAAGGAC
AGCGGCAAGA ACGACTACCA GTTCTACGAA TCCACCATGA GCACGGGCGG GCTCGAACGG
TTGAAACTCG AAGGCGACTT GCGCTACGCC TTGAAACGCA ACGAATTCGT GCTCCATTAC
CAGCCCAGGG TCAACATCAA CACCGGCCTG ATCGTGGGCG CCGAAGCGTT GATCCGCTGG
GATCTTCCCG ATCGAGGCCT GCTGTGGCCC CTGGATTTCA TCCCCCTGGC GGAAGAAAGC
GGCTTCATCA TCCCCATCGG GGAGTGGGTC CTGAGAACAG CGTGCCTGCA GTGTAGGAAA
TGGCAGGACG CCGGGGTTCC GCACCCCCGG GTCTCCGTGA ATCTGTCCAC TCACCAGTTC
AAGAAAGACA ACCTCACCTC GACGGTGGAT CGAATTCTCA AGGAAACGGG GCTGAGCCCC
GGGCTGCTCG AGCTCGAGAT CACGGAAAGC GCCATGATGG AAAACCTCGA AAAGGCCGTC
GCGACCCTCC AGGGCCTTGC GGAACTCGGC GTCAACGTGG CCATCGACGA CTTCGGCACC
GGGTATTCGT CCCTCGGTTA TCTCAAACGG TTCCCCATAG GGGCTCTCAA GATCGACCAG
TCGTTTGTCC GGCACATTCC TTCCAATATT GACGATACGG CCATCGCCAT GTCGATCATC
TCCCTGGGAA AGACCCTGAA CCTGAAGGTG GTGGCGGAAG GAGTCGAGAC CCAGGAGCAA
CTGACGGTCC TTCGGAACTA CCAGTGCGAC GAAGCCCAGG GCTACCTGTT CAGTCAGCCG
GTAGATGCCG ACCGCATGAC CGAATTCCTC GTGAACCCGT CCGGGTTGAA CCTGTCCGAT
CTTTTCGAGC AATGA
 
Protein sequence
MSDRVLPYLP DDISNKQIPI LVVDDLRDNL DLMEALLVSE GFEVVHLIPS GQEALEFLET 
HRDIGVILMD MMMPGIDGHE MCRRITTHES TRHIPVIIVT GGALRHNEAV QKSFAAGAVD
FVTKPINEVE LFMRIHSALA LYRERVIRHH KTRELRESEE KFRVTFDQAP VGIAHVNADG
RLLLINRRLC EMLGFQEREL IESSFPDLCV PENRDVHERE LKKSVEQGLE YHGFEIPLVH
KDGRIIWTKL TLSPMKDAAG VPKYFIHIVE DITERKNFED NLRLSATVFE GSTEAIIITD
ARANILRVNS AFTAMTGYAD HEVVGKNPRL LKSGNHHEEF YRAMWATLSS TGQWQGEIWN
RRKNGDIFPA WLTLCAVRNS EDKITNYVGI SRDITLRKEA EERLSYQASH DALTGLPNRA
RFHDRLTHAL ARAGRDRHEF AILFLDLDRF KVINDTLGHT VGDFLLQGVT KRLLGGTRES
DTLARWGGDE FIILLESIRG AEDAAVAARR ILDVLAEPFS VQGHEVFVSG SIGISVYPRD
GEDVQALLRC ADIAMYRAKD SGKNDYQFYE STMSTGGLER LKLEGDLRYA LKRNEFVLHY
QPRVNINTGL IVGAEALIRW DLPDRGLLWP LDFIPLAEES GFIIPIGEWV LRTACLQCRK
WQDAGVPHPR VSVNLSTHQF KKDNLTSTVD RILKETGLSP GLLELEITES AMMENLEKAV
ATLQGLAELG VNVAIDDFGT GYSSLGYLKR FPIGALKIDQ SFVRHIPSNI DDTAIAMSII
SLGKTLNLKV VAEGVETQEQ LTVLRNYQCD EAQGYLFSQP VDADRMTEFL VNPSGLNLSD
LFEQ