| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1590 |
|---|
| Symbol | |
|---|
| ID | 4460125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1939392 |
|---|
| End bp | 1940777 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639702357 |
|---|
| Product | shikimate/quinate 5-dehydrogenase |
|---|
| Protein accession | YP_845712 |
|---|
| Protein GI | 116749025 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0373] Glutamyl-tRNA reductase |
|---|
| TIGRFAM ID | [TIGR01035] glutamyl-tRNA reductase
[TIGR01470] siroheme synthase, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.715932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCCACA TTATCCTTCT AGGCATGAAC CATAAGACGG CGCCCGTGGA GATGCGGGAA
AGGCTTGCCG TGGCATGCCG GCAGGAAGTC AACCCGCTTC GTCTGCTGCC GCGCCTGGAG
AATGTCGATG AGTTGTTGTT CCTCTCGACC TGTAACCGTG TCGAGTTCCT GTTCACCTGC
AGGGACCGGG ATGGAGGGCT CAGGGAGGTG ACGGCTTTGC TTCGAACCTA TCTTGGGTTG
GATTCCACCG AAGGCGTGGA AAACCACGTG TACGCATTCA GAGGCATGGA AGCGGTGCGC
CATGTCTTCA GGGTTGCCTC GAGCCTCGAT TCCATGGTGG TGGGAGAACC CCAGATTCTC
GGACAGCTCA AGAGCGCCTA CCGGGAAGCG ACGGAATGGC GCACCGTCAA GGTCATACTC
AATCGTCTGC TCCACAAGAC CTTTTCGGTG GCCAAGAGAG TTCGGTCGGA GACCTGCATC
GGTTCAAACG CCGTGTCCAT CAGTTATGCC GCCGTGGAAC TGGCCAAGAA GATCTTCGGC
AGCCTGCAGG ATAAACGCGT TTTACTCATC GGCGCCGGCG AAATGGCGGA ACTGGCCGCC
GAACACTTGC TCGCCCAAGG GGTTCGGCAC ATGGTGGTCG CCAATCGCAC CCTCGAGCGG
GCGGTCGATC TGGCAAAACG TTTCCGGGCC GAAACCACGC CTTTCGACCA CATTCTGAAC
GCGTTGAAGA ATACGGACAT CGTGCTTTCC TCCACGGGAG CGCCGGAACC GATCCTCAAA
TACAATGATG TCAGGGCAAG GATGCGCGAG CGACGCAACA AGCCCTTGTT TTTCATCGAC
ATTGCGGTAC CGCGGGACAT CGATCCCAAA ATCAACGAAA TCGACAACGT GTACCTGTAC
GACATCGACG ACCTGCAGGG AGTCATCGAC CTCAATCGCG AGGAACGCAA AAGAGAAGCC
GAACGAGCGG AACACATCAT TGCCGGGGAA ACGTTGAAGT TCCAGGAGTG GATGGCCACG
CTCAACGTGG TCCCGACCAT CGTCGCTTTG CGTGAGAAAG CCGAGACGAT CCGGCGGTCC
GAGCTTCAGA GAACCCTCTC GCACCTTCCC CACATGAGTG AAAAGGATCG GCTTGCCGTC
GAGGCGCTCA CGGAGGCGAT CGTCAAGAAG CTGCTGCACG ACCCCATCGT GTTTCTGAAG
AAAAAAGCCG ACCGCAGCAC CAAGGACATG TATGTCGATT ACACGCAACA GTTGTTCAAC
CTTGCCGATG GTGACGACGG CGAGGAAGCG CCCGCCGTCA CTGTCCAGAT GGCATCGGCC
GGCAATGACG GCACTCTGCT GAAAACCTTT GAACCGGATA AGGAATCCCC ATGGCGGAAA
TCATAG
|
|---|
| Protein sequence | MCHIILLGMN HKTAPVEMRE RLAVACRQEV NPLRLLPRLE NVDELLFLST CNRVEFLFTC
RDRDGGLREV TALLRTYLGL DSTEGVENHV YAFRGMEAVR HVFRVASSLD SMVVGEPQIL
GQLKSAYREA TEWRTVKVIL NRLLHKTFSV AKRVRSETCI GSNAVSISYA AVELAKKIFG
SLQDKRVLLI GAGEMAELAA EHLLAQGVRH MVVANRTLER AVDLAKRFRA ETTPFDHILN
ALKNTDIVLS STGAPEPILK YNDVRARMRE RRNKPLFFID IAVPRDIDPK INEIDNVYLY
DIDDLQGVID LNREERKREA ERAEHIIAGE TLKFQEWMAT LNVVPTIVAL REKAETIRRS
ELQRTLSHLP HMSEKDRLAV EALTEAIVKK LLHDPIVFLK KKADRSTKDM YVDYTQQLFN
LADGDDGEEA PAVTVQMASA GNDGTLLKTF EPDKESPWRK S
|
|---|
| |