Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_1257 |
Symbol | |
ID | 4460684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 1552566 |
End bp | 1554599 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639702026 |
Product | excinuclease ABC, C subunit |
Protein accession | YP_845384 |
Protein GI | 116748697 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGAGATC CCAAGTCACC CACCCCGGAT TCCGGCTCAT CTGCGGGTAG ACCCGGATCA TCCGCAACCG TCCGCGAGCC GCACACTGCC GATCCCGGCT CGCCTCCAAC CGAACCCGGC TCAGCCGCGT TCGACCCCGG CCCGCTCACA GCCGACGCCC AGGCGCCCGA CGGCGCAGTC CCTTGCGACG ACTCCCCTTC CCTGCTCTCC AAAACGGCTT CATTCCCGCA TCTGCCCGGA GTCTACCTGT TCAAGGACGC CTCCGGCGCG GTGCTCTACG TCGGGAAAGC CATCGACCTG CGCAAGCGCA TCGCCAGCTA CTTCAAGAGC ACCGGTCCGA TCCCCGTGAA GACGCGCGCG CTCATGGGGA AAGCCGCGGA CATGGAATAC GTCGTCACCT CCAACGAGAA GGAAGCCCTG CTCCTCGAGG CGAGCCTCAT CAAGAAACAC CGACCGCGTT ACAACGTGGT CCTGCGCGAC GACAAGAACT ACCCGGCGCT GCGCATCGAC CCCCGCGAAC CTTTCCCGCG ACTCGAAGTG GTCCGCCGAT TCCAGAGGGA CGGGGCACTC TACTTCGGCC CATACCACTC CGCGTACGCA CTCCGGGAAA CCCTGCGGCT CCTGCACCAG CTCTTTCCCC TGCGTCTCTG CAAGGGAAAA CGGCTGCTCG CCCGCGAACG CCCCTGCCTC AACTACTCGC TCGGCCGCTG CCTCGGGGCT TGTGCCGGGA GAGTTTCCCC GGAAGACTAC CACAAGATGG TGGACGAGGT CGTCCTGTTC CTGCAGGGCA AAACGGACGT GCTCCAGCAG CAGTTGCGCC GGCGCATGGC CGACGCAGCC GAAGCCCTGA ACTTCGAGCT TGCCGCCTAC TACCGGGATC GCCTCCAGGG CATTGCTTCC ATGCTGGAAA AGCAGCACAT CGTCTCCGAC CGATTTCTCA ACCAGGACGT GATCGGCCTT CATGTCGGGG AAGAAGGCGC CGAACTGGCG ATCCTGTTCG TGCGCAAGGG CACTCTCACC GGCCAGCGGG ACTTCGATCT CCGGGACGCC CAGGGCGAGC CCATGGAGCT GCTGACCGCC TTCATTCAGC AATTCTACCG GGAAGACCGT TACATCCCCG ATGAAATCGT GGTACCGGCC CCCGTCGAGG CCGAAGCGCT CCTGGAGGAG TGGCTCACCG AATTGAAAGG AAAGCGGGTC CGGGTCTGGG CCGCCAGGCG CGGAGATCGC CGCGAGCTGC TGGAAATCGC CGGGAAGAAC GCCCGGGAAC GGTACACCAG CCGGCGAAAG TGGCAGAAAC GGGACGTCAC CATGCTCCAG AACCTGCAGC GCATTCTGAA ACTCCCGCGT GCCCCTCTGC GCATGGCCTG CGTGGACATC TCGAACATCC AGGGACGGCA CGCGGTCGGT GCCGTGGTGG TGTTCTCCGA AGGCTCCCCG GATAAGGACT CCTACCGCCG CTACCGCATC CACGGCAAGA CGGAGCCCGA CGATCCCGCA ATGATGGCGG AAGTGATCGA ACGGCTTCTG AAGAACGATG CACCCCTGGC TGAAAGCCTG GATCTGCTCG TGCTCGACGG CGGCAAGAGC CAGCTCAACC GGATTCGCCG ACTCATGGAG GAACTGGGAG CCGCCGAGGG ACTTCCGCTC ATTTCCATCG CCAAGGAGAA AGAAACCGAC CGCGGCGAGA AGGGCCGCGG CCTCTACGAA AAGATATACC TCCCGGGACG CAAGAACCCA TTATTTCTCC ACCACTATCC GGACATTCTG CACCTCTTGC AGCGGCTGCG CGACGAGGCT CACCGCTTTG CCATATCCCA TTACAAGAGC CTCCATCGAA ACGATCTCCT GGCCTCCGCC CTGGATGCCG TTCCCGGAGT GGGTCCGAAG CGGAGCCGGC TGCTCATTCG CCATTTCGGC AGCATGAAAG CCCTGCGGGA GGCGAGCGTG GAGGATATCG CGCAGGTGCC GGGGGTCCCT CCGACCGTCG CTCGAACCAT TTTCAACATT CTGCGGAGCA GCGGCGAGGA ATAG
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Protein sequence | MGDPKSPTPD SGSSAGRPGS SATVREPHTA DPGSPPTEPG SAAFDPGPLT ADAQAPDGAV PCDDSPSLLS KTASFPHLPG VYLFKDASGA VLYVGKAIDL RKRIASYFKS TGPIPVKTRA LMGKAADMEY VVTSNEKEAL LLEASLIKKH RPRYNVVLRD DKNYPALRID PREPFPRLEV VRRFQRDGAL YFGPYHSAYA LRETLRLLHQ LFPLRLCKGK RLLARERPCL NYSLGRCLGA CAGRVSPEDY HKMVDEVVLF LQGKTDVLQQ QLRRRMADAA EALNFELAAY YRDRLQGIAS MLEKQHIVSD RFLNQDVIGL HVGEEGAELA ILFVRKGTLT GQRDFDLRDA QGEPMELLTA FIQQFYREDR YIPDEIVVPA PVEAEALLEE WLTELKGKRV RVWAARRGDR RELLEIAGKN ARERYTSRRK WQKRDVTMLQ NLQRILKLPR APLRMACVDI SNIQGRHAVG AVVVFSEGSP DKDSYRRYRI HGKTEPDDPA MMAEVIERLL KNDAPLAESL DLLVLDGGKS QLNRIRRLME ELGAAEGLPL ISIAKEKETD RGEKGRGLYE KIYLPGRKNP LFLHHYPDIL HLLQRLRDEA HRFAISHYKS LHRNDLLASA LDAVPGVGPK RSRLLIRHFG SMKALREASV EDIAQVPGVP PTVARTIFNI LRSSGEE
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