| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1075 |
|---|
| Symbol | |
|---|
| ID | 4460840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1323586 |
|---|
| End bp | 1326783 |
|---|
| Gene Length | 3198 bp |
|---|
| Protein Length | 1065 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639701840 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_845204 |
|---|
| Protein GI | 116748517 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.405118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.514139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCCA GATTCTTCAT CGAGCGGCCC ATCTTTGCCA CCGTCGTTTC ATCGATCATC
GTGATAGCCG GCCTGGTATC GATGAAGGCC CTGCCCGTCT CGCAGTATCC CACCATCACG
CCGGTGCAGA TCCAGGTGAC GACCACCTAC CCCGGCGCGG ACTCGAAGAC GGTGGGCGAT
TCCGTGGCGG CGCCGATCGA GGCTCAGATC AACGGCGTCG ACAACATGCT CTACATGATC
TCGACCAGCT CCAACACCGG CCAGCTGACG ATCACCGTCT ACTTCACTCT CGACACCGAC
CCCGACATCG CCCAGGTGCA GGTCCAGAAC CGGGTGAACC TCGCCATGCC GCAACTGCCC
GAGGCGGTGG CGCAATATGG CGTCGCGGTT CAGAAGAACT CCACCACATG GCTGATGCTC
ATCGGGGTGA GCAACAAGGA CGGCCGTTAC AGCCCGGATT ACGTTGCCAA TTACGCCAAC
GTTTACGTGC TCGACGCCAT AAAACGGGTC AATGGAGCGG GCCAGAGCCA AGTTTATTAC
GACGTGCCGG ACCAGGCGAT GCGCATCTGG ATGAACCCGG ACCGGATGGC CTCCCTCGGG
ATAACGACAT CGGACATCCA GCAGGCGGTG GCCCAGCAAA ACGCCCTGTA CGGCGCCGGC
CAGATCGGCC AGCAGCCCTC GGACGAATCC GTGGAGTTGA CCTTCCCGGT CGTGACCCAG
CCTCCTTTCA TCCAGCCGCG GCAATATGAA GACATTATTT TGCGCGCCGG ACCGGACGGC
AGCGCCCTTG TCCGCCTCAA CGACGTCGCC CGCGTCGAAG TCGGCCGCAA GCAGTATATC
CAGGATACCC GCCTTGACGG GATACCGGCG ACCATCATCG CCGTCTACCA GCAACCGGGG
GCCAACGCCC TGGCTGTCTG CAAGGCGGTC CGCCAAACCC TGGACGAGCT CAAAAGAACG
ATGCCCAGCG GCATCGAGTG CACGATCGCG CTCGACACCA CGGATTTTGT CCGGCTCTCC
ATCGAGGAGA TCATTCACAC CCTGATCGCG GCCGTAATCC TCGTGGTGCT GGTCGTTTAC
CTCTTTCTCC AGAGCTTTCG CGCCACCGTC ATCTGTTCGG TCGCCATCTT TGTTGCGCTC
ATCGGCACCT TCCCGGGCAT GCTCGCCATG GGATTCTCGA TCAACCTGCT GACCCTGTTC
GGCCTCATCC TCGCCATCGG CATGGTGGTC GACGACGCCA TCGTCGTGGT CGAAAACGTC
GAACGCAACA TGGTGAAGTA TCACCTTACG CCCCGAGAGG CCACGATTCG GTCCATGGAG
CAGATCGGAA CCTCGTTGAT CGCCGTGGTG CTGGTGATGG CATCGGTTTT CATCCCGGCC
GCGTTTCTGC CCGGCACCAC GGGACAGCTC TACAAGCAGT TCGCCGTCAC CATCGTCATT
TCGGTGGCGC TCTCGGGGTT CGTGGCGCTC ACCCTCACCC CGGCCATGTG CGGGGTCCTG
CTCAAGCACA GGCCCCCTCC GCAGCGCGGC CCCTTTGCCT GGTTCAACCG GCAATTCGAC
CGTTTCACCG CTGTCTTCGG CGATGCGGTG GTGTTCATGA TCAGGCGCAT GGGAGTGGCG
TTCGTACTGC TCGCCGTGTT CATCGGAGGG CTTGCATACC TTTTCCGGAC CATCCCGACG
AGCTTCGTGC CGAACGAAGA TCAGGGCTAT TTGTTTCCCG TGTTCGTTCT GCCCGACGCA
TCGAGTATCA ACCGCACCTC CGCGGCAACC GAAATCCTGG ACGAGTTGTT CGCCCGGAAC
CCCGCCGTGG AGCACAGGGT CGTTCTGAAC GGCTTCAGCG TGCTCGACCT CCAGACCAAG
AACAACGCGG CCACCCTTTT TATCATGCTC AAGGATTTCA AGGAGCGCTA TGCTTCCGGG
GATCGCGCCG CCAAGGAGAG CGCCCGGGCG GTCTTTGAGA ACGTCGCGGC CGAGGCGCGG
AGCAGATTCG CTACGGGGGT GCTCCTGCCG CTCTTCCCCG CGGCTATTCC CGGCATCGGA
ACGACGGACG GTTTCGAGTT CTGGATCCAG GATACGGGGG CCGGAGACCC GGTGCGCCTT
TATGAGGTTA CCCAGAAATT CCTTTCCAGG GCGCGCGGGC GGTCCGAGCT CGCGGGCCTG
AGCTCGACCT TTCGCGCCTC CTCGCAGCAG CTCCGCGCGG AAGTGGACCG GTCCAAATCC
GTGCTTCTGG GGGTTCCGAT CGAAGACGTA TACAGCGCGT TGCAGGCCCA GTTCGGTTCG
ATCACGGTGA GCCAGTTCAA CCAGTTCAGC CGCGTGTGGA ACGTGATCCT GCAGTCCGAC
GCTCCTTTCC GGAGCGACCC CATGGACATC ACCAGCCTGT ACACGAGATC CAACGACAAT
CAAATGGTTC CGCTTTCCGC GCTGGTCAAA ACCGAATACG TTACGGGCCC CGACCTGGTG
CCCCACTTCA ACGGCTTCCC CGCCGCGCAG ATCACGGGCT GCGCCGCCGC GGGCCACAGC
TCGGGAGATG CGATCGAAGC GATGGAGGAA ACGGCGCGCG AGGTGCTGCC CGCGGAATAC
GATTTCGCAT GGTCGGGCAT GGCCTTCGAA GAAAAGAAAG CGGGGGCGAC CTCAACGGCG
GCGTTTGTCT TCAGTCTCAT CATCGTCTTC CTCGTGCTCG CCGCTCAGTT CGAATCCTGG
ACGCTTCCGG GATCGGTCAT GACGGCGGTG CCGTTCGGAA TCCTCGGCGC GTTCATTTTC
AACTGGCTGC GGGGCCTGGA AAACGACGTC TATTTCCAGA TCGGCCTCCT GGTGCTCATC
GGGCTTGGGG CAAAAAACGC GGTCCTTCGC GTGACCTTCG CCGTCGAGCT GCGCCGGCAG
GGATTGTCGA TCATGGACGC GACCATCAAG GCGGGCGAGG AGCGGCTGCG ACCGATCATC
ATGACGTCCC TCGCCTTCAT TCTGGGAGTG CTTCCGCTGG CGATCGCCAC GGGAGCGGGC
GCCAGCGCCC GCCACTCCAT CGGCACCGGC ATCATGGGCG GCATGATCGG CGAAACCACC
CTGGCCATGC TTTACGTGCC GCTCTTTTTC TACATTTTCG ACCGGCTCGC CGAACGCTCG
CAGGCAAGGA AAGAAGAGAT TCCGCCTGAC AAACCGGGCG AGTATCCCGG CCCGGTCCTC
GATCGGAATA ATGTGTGA
|
|---|
| Protein sequence | MFSRFFIERP IFATVVSSII VIAGLVSMKA LPVSQYPTIT PVQIQVTTTY PGADSKTVGD
SVAAPIEAQI NGVDNMLYMI STSSNTGQLT ITVYFTLDTD PDIAQVQVQN RVNLAMPQLP
EAVAQYGVAV QKNSTTWLML IGVSNKDGRY SPDYVANYAN VYVLDAIKRV NGAGQSQVYY
DVPDQAMRIW MNPDRMASLG ITTSDIQQAV AQQNALYGAG QIGQQPSDES VELTFPVVTQ
PPFIQPRQYE DIILRAGPDG SALVRLNDVA RVEVGRKQYI QDTRLDGIPA TIIAVYQQPG
ANALAVCKAV RQTLDELKRT MPSGIECTIA LDTTDFVRLS IEEIIHTLIA AVILVVLVVY
LFLQSFRATV ICSVAIFVAL IGTFPGMLAM GFSINLLTLF GLILAIGMVV DDAIVVVENV
ERNMVKYHLT PREATIRSME QIGTSLIAVV LVMASVFIPA AFLPGTTGQL YKQFAVTIVI
SVALSGFVAL TLTPAMCGVL LKHRPPPQRG PFAWFNRQFD RFTAVFGDAV VFMIRRMGVA
FVLLAVFIGG LAYLFRTIPT SFVPNEDQGY LFPVFVLPDA SSINRTSAAT EILDELFARN
PAVEHRVVLN GFSVLDLQTK NNAATLFIML KDFKERYASG DRAAKESARA VFENVAAEAR
SRFATGVLLP LFPAAIPGIG TTDGFEFWIQ DTGAGDPVRL YEVTQKFLSR ARGRSELAGL
SSTFRASSQQ LRAEVDRSKS VLLGVPIEDV YSALQAQFGS ITVSQFNQFS RVWNVILQSD
APFRSDPMDI TSLYTRSNDN QMVPLSALVK TEYVTGPDLV PHFNGFPAAQ ITGCAAAGHS
SGDAIEAMEE TAREVLPAEY DFAWSGMAFE EKKAGATSTA AFVFSLIIVF LVLAAQFESW
TLPGSVMTAV PFGILGAFIF NWLRGLENDV YFQIGLLVLI GLGAKNAVLR VTFAVELRRQ
GLSIMDATIK AGEERLRPII MTSLAFILGV LPLAIATGAG ASARHSIGTG IMGGMIGETT
LAMLYVPLFF YIFDRLAERS QARKEEIPPD KPGEYPGPVL DRNNV
|
|---|
| |