| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1020 |
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| Symbol | |
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| ID | 4460956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1255767 |
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| End bp | 1257875 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639701783 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_845149 |
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| Protein GI | 116748462 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.221664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCA ATAATGTTCA GGTACAGCGA CCCGTCATGC TGCTCTCCGA TGATGATTCG
GAGGTGAGGC GGCTCGTCTA CGACTCGTTG GACAGGCTCG GATGTGAGAT GGAAGAACCG
GACAACGGGG AACAGGCGCT TGCGGCTTTC AGGCGGATTC AACCCGAAAT CGTGCTTCTT
GACCTCGCGA TGACGCAAGC GGATGCATTC GAGCTTTGCG CTTCCCTCCA CGGAGCCAGG
GGGGGCGAAC GGGTGTCGAT CCTGGCGGTT GCGGGTCGCG GCGATTTGGA AGGTGTTCGG
CGCGCGATCG ATGCGGGCGC GACCGATTTT CTCATTCATC CCGTCGACGT CGAAATGCTC
GGGCTTCGCC TGAGCTGCGG ACGGCGTTCC GCGCAGACCC GTGAGAGATT GAGCCGGAAT
GAGGAGAGAA ACCGCGGTTT GATCAAGGGT ATTCCCCACC TGGTGTTGCA GATATCCAAA
GAGGGGACGG TGCTCGATTT CGAGGCTCCC CGGGATTTCG ACCTGAGGCA GTTTCCCGAC
GGCCTGCGCG GACGCAGGAT CCAGGACGTC TTTTTCGCCG ATGCCCCCTA CGTGATCGTG
AGGTGTATCG AAAGGGTGAT CGAAACCGCC GAAAGCCAGG TTCTGGAGCA CAACGTTCGC
ATTGGGAACG ACATTCATGT GTATGAGACC CGCATCCTTC CCAATGCGGA AGGTGAGCCC
ACCGTCGTGA TGAGGGATGT CACGGAACGC AGAAAAATGG AGAAGGAACT GCTTCAGCTT
GCGTATCACG ATCCGCTGAC AGGGCTATTG AACCAGCATT CCATGAGGGA ACGCATCGCG
CGGGCATTGG AGCTTCCCGG ACAGCACGGC CGCATGACGG CCATCCTGTG GGTCGACATC
GACCATTTGA AACGGGTCAA CGCCACCTTC GGCCACGAGC TTGGAGACGT GCTTCTGCAG
CGCGTTGCGG ATCGGATGCT GGGCTGCGCC CGCAGGACCG ACCGCAAGGC CAGGTTGGGA
AGCGACCAGT CGATCAAAGC CGTTGCGCGC ATGGGAGGGG ACGACTTTGT CGTTCTGCTG
ACCGAAATCA GCCACGTCAA GGGAGCCGCC AACCTGGCAA AGCGGCTCCT TGACGACCTC
TCGCAGCCCT TTGTGCTCGA TCGTCACGAA GTCTATGTCA CGGCCAGCAT CGGCATAGCC
GTGCATCCCC ATGACGGCGC GGAAGCCGGT ACTCTGCTCA AGAATGCCGA CTCGGCGATG
CATCACGCCA AAGCCGAAGG ACGAAACAAC TTCCAGTTCT ACACGTCTTC CGGTAAGACC
GCCGCGTTGA GGAGCCTCAC CCTCGAAGGC GACCTCCGCA TGGCCCTGGC GCGCAGGGAA
CTGTTCGTCG AATATCAGCC CGAAATCGAT CTCAAGACCG GTGAAACCGT CGGCCTGGAA
ACACTCGTTC GATGGGACCA TCCGACCCTG GGACTGATTC CTCCCCTCGA TTTCATCCCC
CTGGCCGAGG AAACGGGACT CATCCTCCCG ATCGGTGAGT GGATCCTCTC CATTGCCTGC
ATGCAGAACG CCATCTGGCA CAAGTCGGGT CTCGAACCGA TCCGGGTGGC CGTGAACCTG
TCCGGGCATC AATTCCGCCA GAGAAACCTG ATCAAGACCA TTGCCAAGAC CCTCACGAAC
TCACGGCTCG ACCCCCAGCA CCTCGAACTG GAGATCACCG AAAGCACCCT CATGGAAAAC
GCCGCATCCA CCATCCATAC GGTGAAGGAA CTGAAAAGCA TGGGGGTGCG ACTCGCCGTC
GACGATTTCG GTACCGGGTA CTCCTCGTTG AGCTACCTCA GGCGTTTTCC TCTGGATGTG
CTCAAGATCG ACCGGTCGTT CATCAGGGAC GTCACGATCA ATGCGGACGA TGCCGCCATC
ACGAGGGCCA TCATTGCCAT GGCCCACAAT CTCAACCTGG AGGTGATAGC CGAAGGGGTG
GAGAACGAGC AACAACTGCA ATTCCTGCAG GAGAACAATT GCGACATGGC TCAGGGGTAC
TACTATTGCC GGCCGCTCAC CCCGGCCAAG CTCACCAAAC ACCTGGAGAA GCAAAGCAGC
GGCCTTTAG
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| Protein sequence | MKTNNVQVQR PVMLLSDDDS EVRRLVYDSL DRLGCEMEEP DNGEQALAAF RRIQPEIVLL
DLAMTQADAF ELCASLHGAR GGERVSILAV AGRGDLEGVR RAIDAGATDF LIHPVDVEML
GLRLSCGRRS AQTRERLSRN EERNRGLIKG IPHLVLQISK EGTVLDFEAP RDFDLRQFPD
GLRGRRIQDV FFADAPYVIV RCIERVIETA ESQVLEHNVR IGNDIHVYET RILPNAEGEP
TVVMRDVTER RKMEKELLQL AYHDPLTGLL NQHSMRERIA RALELPGQHG RMTAILWVDI
DHLKRVNATF GHELGDVLLQ RVADRMLGCA RRTDRKARLG SDQSIKAVAR MGGDDFVVLL
TEISHVKGAA NLAKRLLDDL SQPFVLDRHE VYVTASIGIA VHPHDGAEAG TLLKNADSAM
HHAKAEGRNN FQFYTSSGKT AALRSLTLEG DLRMALARRE LFVEYQPEID LKTGETVGLE
TLVRWDHPTL GLIPPLDFIP LAEETGLILP IGEWILSIAC MQNAIWHKSG LEPIRVAVNL
SGHQFRQRNL IKTIAKTLTN SRLDPQHLEL EITESTLMEN AASTIHTVKE LKSMGVRLAV
DDFGTGYSSL SYLRRFPLDV LKIDRSFIRD VTINADDAAI TRAIIAMAHN LNLEVIAEGV
ENEQQLQFLQ ENNCDMAQGY YYCRPLTPAK LTKHLEKQSS GL
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