Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0684 |
Symbol | |
ID | 4460186 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 830066 |
End bp | 831946 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639701441 |
Product | TPR repeat-containing protein |
Protein accession | YP_844818 |
Protein GI | 116748131 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.073347 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGTAGCA GAAAACGAGG GAAATACTCG TTCAATCTGG ACGAATCCGT GGTGAGAACC CGTTCCGTCA AAAAAGGGGG CGGCAGCGGA CGATGGATTG TCCTGTTCGT GCTGCTCGCC GTTCTGGCGG GATCGGTCTA TTCCCTGGTG ATCACCGGGT CCGCGGACGA CCTGGCTTCC TACCTTCCTT TTCCCAAGAA GCTCGTGGCG CTGCGATTTC AGCACAACGG CCAGGAAGTC GTGCTGCTGC CGGATTCCCA GGTGGTCCTC AACCCACGGG ACTCGCTCCG GCTCCTGGAA ATCCAGACCG ACGGATGGGT CAGCTGGGGG ACCAAGGCCG CATCCGCCGA TCTGAACGTC AAGGCGATTT TGAACAAACC CGCTGTCATC CAGGACCTTT TCCCACAGGA ATCTTTCGAG AAGCCGAAAG CGATCGAAAT CAGGGTGCTG CTCTGGAATC GTTTCATCGG GAAGGTCAAT TTTCTCGTGC AGTTGGATGC CCGCGACTGG GTGCAGAAGG CCAACGCCAC CTCGGACCTG GACCGCAAGA TTTTCTTTCT TGAGAAGGCC TTGCAGGAGA ACGCCGGGAA CGTGCTCGTG AAGACGCAAC TGGCCGGGCT CTATTTCGAG GACAAGAAAT ACGATGAAGC CGGGAGGTTA TATCGGGAAA TCGATGCGTC CGGGAAGTCC AAGTCGATTT CGGAGCGGCT CCTGCTCGTC TACCAGATCC AGAACAAGGT GGACGACGCG TTGATGGTCT ACCTGGACCT CTTCAAACTG TCCGAGGAAC CCGAGACCTT CAAGGAGTTC CTCCAATATA TACAGAAAAA GAAATCCAAG GAGGATGCCG CGCGGTTCCT CGAGAAGCAC CAGCAGCACA TTCCGAAAGC CTTTCAAAGC TCCCTCATGC TGTTCCTGGC GGATCTGAAC ACGCAGACGA AAAACTGGGC CAAAGCCGCC ACGTCTTATG AGAAGGCGAT CAAAGCGGGG ATCAAGGATC CCGATGTGCT GTACAACCTG GCGGTGACCT ATCAGCAAAG CGACGATCCG GACAAGGCCA TACAGGCCCT GGAAAAATAC CTGCAGAAAA ATCCCGGCGA CACAAAGAGC TGGTTGCAGC TGGGTGAGCT GCAGGAAAAG AAGGGTGCCC TGACGCAGGC GCGGTCCACG TACGAGGCGA TGCTTCAGAA GAATCCTCAG AACAGGGAAG CCCTGGTGAG GCTGGTGGCG ATCCTCGAAA AAGGAAAGGA CAAGGGCGCG CTCCAGGCCG CCTATCAGAA ACTGGCCGCG ACTCAGCCCA GGAACAAAAC GATCCAGCAC AACCTGGGCG TGCTCTACTA CGATGCCAGG AAATACGACA AGGCCGCGGC ATGTTTCGAG GCGGTTGTAG CCCTCGATCC CAAGGACGTG GAATCGCGCA AGTATCTGCT CGACATCTAC CGAAAGCAGA AAAACGACAA GGCGGCTACC GCCGTGATCC AGTCCCTGGC CCAGCTCGAT CCAAAAAACA CGAGCTACTA CGATACGATC TTCAAATCCT ATGAACAGAA AAAGGACTAC AAGGGCATGG CGGCCTTCTT CCGGACCGCA TCCCAACAGC ATCCGGAGAT GGTTGCCCTG CACAACTACG CGCTTTTCGC CGCCTTGAAA ACCGGGGACA ACAAGGGGGC GATCAAGGAA CTGGATCACC TGAACAGGCT CCAGCCGAAA GAAAAGAAGC ACCTGAGGCA GGCCGCCAAC CTGTGTGAGT CTTCGGGGGA CCATGCCGGG GCGTTGAAGA GGCTCGAGTT GTTGCTGAAG CTCGATCCCA AGGACAAGGA AGCCAAGGAG GACTACCTGC GCATCAAAAT GCTGATGGTG ACGAAAAAGA AGCCCGAGTA G
|
Protein sequence | MGSRKRGKYS FNLDESVVRT RSVKKGGGSG RWIVLFVLLA VLAGSVYSLV ITGSADDLAS YLPFPKKLVA LRFQHNGQEV VLLPDSQVVL NPRDSLRLLE IQTDGWVSWG TKAASADLNV KAILNKPAVI QDLFPQESFE KPKAIEIRVL LWNRFIGKVN FLVQLDARDW VQKANATSDL DRKIFFLEKA LQENAGNVLV KTQLAGLYFE DKKYDEAGRL YREIDASGKS KSISERLLLV YQIQNKVDDA LMVYLDLFKL SEEPETFKEF LQYIQKKKSK EDAARFLEKH QQHIPKAFQS SLMLFLADLN TQTKNWAKAA TSYEKAIKAG IKDPDVLYNL AVTYQQSDDP DKAIQALEKY LQKNPGDTKS WLQLGELQEK KGALTQARST YEAMLQKNPQ NREALVRLVA ILEKGKDKGA LQAAYQKLAA TQPRNKTIQH NLGVLYYDAR KYDKAAACFE AVVALDPKDV ESRKYLLDIY RKQKNDKAAT AVIQSLAQLD PKNTSYYDTI FKSYEQKKDY KGMAAFFRTA SQQHPEMVAL HNYALFAALK TGDNKGAIKE LDHLNRLQPK EKKHLRQAAN LCESSGDHAG ALKRLELLLK LDPKDKEAKE DYLRIKMLMV TKKKPE
|
| |