| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0303 |
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| Symbol | |
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| ID | 4460905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 364399 |
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| End bp | 366129 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639701058 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_844439 |
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| Protein GI | 116747752 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.535404 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAGC AGATGGAGCA AAGTCAAATC AAAGCCTTCC TCGACGCCGC TCACGAAGGC
GTGCTGGCGG TCGATGCCGA TGGCCGCGTC ACGCTCTTCA ATACCGCCGC CGAACGTCTG
ACGGGGATAT CGGCGGATGT CGTTCTCGGG CATCACGTGC GGGATGTGAT CCCCAACACC
CGGCTGCACA TCGTCCTCGA AACCGGGGAA GCCGAACTGG ATCAAATCCA GGACACCGGA
ATGACCACCG TGATGACCAA CAGGGTGCCG GTGCGCAATG CCCGAGGCGA GATCGTCGGG
GCAATGGCCA TTTTTCGGGA CATAAGCGAA ATAAAGCGCC TGGGATGCGA GATTGCCGAG
CTCAAAGAAA CGCGCACCCT GTTGGAAGCC ATCGTCAACT CGACCCAGGA CGCCATATCC
GTGGTGGATG AAAGAGGGAT GGGGCTTCTC ATCAATCCAG CCTACACCCG GCTGACCGGC
ATGACGGAGC GGGAGGTCCT TCACCGGCCG GCCACGGTCG ATATCGCCGA GGGCGAGAGC
ATGCACCTGC AAGTGTTGCG CACGCGCCAA CCGGTAAAGC ATGTTCCCAT GAAGGTGGGC
GCGGCGCGAC GCGAAGTGCT TGTGGACGTT GCCCCCATTG TCGTAGACGG TGCTCTCAAG
GGGAGCGTCG CGGTCATTCA CGACGTTTCC GAGCTGCGTT CCCTGACCGA GCAACTGGAC
AGGGCCCATC GGCTGATCCG GCGCCTGGAC ACCAAGTACA CGTTCGAGGA TATTATAGCC
GTAAGCCCGA TCATGCAAGA ACTGCTCGAA CAGGCCCGAA AGGCCGCGGC AACGCCCGCA
ACGGTCCTTC TGTCCGGCGA AAGCGGCACG GGAAAGGAGC TCTTCGCCCA TGCCATCCAT
CATTCGAGCG ATCGCGCCCA ACGGCCCTTC ATCTCGGTGA ACTGCGGCGC AATCCCCGAC
ACGCTCCAGG AAAGCCAGCT TTTCGGTTAT ATCGAAGGGG CGTTCACCGG TGCCAAACGC
GGCGGTCAGA AAGGCCATTT CCTCGAAGCC CAGGGGGGGA CGATTTTCCT CGATGAGATC
GCTGAAAGCA ACCTGGCCGT TCAGACCAAG CTGCTGCGCG TGCTCCAGGA GAAGGAAATC
GTCCCCGTGG GGGCCTCGCG CCCCGTCCCC GTCGACGTCC GGGTCATTAC GGCGACCAAT
GTCGATCTGG CCTCCCTGGT CGAAAAAGGG CATTTCCGAT CCGACCTTTT CTACCGGCTG
CACGTCCTGC CGATCCACAT CCCACCGCTG CGCGAACGGC GCGAAGATAT CCCGCCGCTG
CTGAGTGTTC TGCTCAACAA GCTCAACCAG GAATACAGCC GCCACGTCGA AGGAATCTCC
CCGGAGGCGC TGGAAATGTT CTGCTCCTAC CATTGGCCTG GAAACGTGCG GGAATTGGAA
AACATGCTCG GACGCGCGCT CATCAACATG CAGCCCGGAG AAAAGACGGT GCGCGCCGAA
CACCTGCCGC ACACCTTGTC GGCCTTTGCG CGGCCGGAGG CCAGGCGCGA TGAAGGCGCG
GAGCCTTTGC GCGTCGGGAG GAGTCTGGCC GAGGCTCATG CCGTCTGGGA GAAAGCCCTC
CTGGAGAAGG CTCTGGCCAT GACGAACGCC AACCGCACGC AGGTGGCCAG GCAGTTGAGG
ATCTCCGTGC GGCAGCTATA CAACAAGCTC AAGCGTTACG GACTCGGGTG A
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| Protein sequence | MEQQMEQSQI KAFLDAAHEG VLAVDADGRV TLFNTAAERL TGISADVVLG HHVRDVIPNT
RLHIVLETGE AELDQIQDTG MTTVMTNRVP VRNARGEIVG AMAIFRDISE IKRLGCEIAE
LKETRTLLEA IVNSTQDAIS VVDERGMGLL INPAYTRLTG MTEREVLHRP ATVDIAEGES
MHLQVLRTRQ PVKHVPMKVG AARREVLVDV APIVVDGALK GSVAVIHDVS ELRSLTEQLD
RAHRLIRRLD TKYTFEDIIA VSPIMQELLE QARKAAATPA TVLLSGESGT GKELFAHAIH
HSSDRAQRPF ISVNCGAIPD TLQESQLFGY IEGAFTGAKR GGQKGHFLEA QGGTIFLDEI
AESNLAVQTK LLRVLQEKEI VPVGASRPVP VDVRVITATN VDLASLVEKG HFRSDLFYRL
HVLPIHIPPL RERREDIPPL LSVLLNKLNQ EYSRHVEGIS PEALEMFCSY HWPGNVRELE
NMLGRALINM QPGEKTVRAE HLPHTLSAFA RPEARRDEGA EPLRVGRSLA EAHAVWEKAL
LEKALAMTNA NRTQVARQLR ISVRQLYNKL KRYGLG
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