Gene Sfum_0215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0215 
Symbol 
ID4461478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp252205 
End bp252969 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content61% 
IMG OID639700969 
Producthypothetical protein 
Protein accessionYP_844351 
Protein GI116747664 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.79026 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.274516 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCGAA AACGCTTCTT TGTGGAAAGG GCCGTTCCCG GCGAAGGAAC GATTGATCTC 
GGCGTTGACG CCGCGCACCA TATCGAACAT GTGCTCCGTC TCAGAGCCGG AGAAGAAGTG
GAGCTGATCG ACGGGGTTGG TGGCGGCTGG CTGGGCGCAA TCGTGGAAGC GGGAACGGGA
ACGGTGCGGG TGAGGATTAC CGGCAGGCTC GGTCCGCCCG CCGAATCTTC GCTCAATCTT
TCACTGGCGT TGGCTTTTTC CCGTGCCGAC CGGATGGACC TGGTTCTGAG GCAGGCTACG
GAAATCGGTG TGAACCGGTT CATCGCTTTC AGATCGCGGA GAAGCCAGTA CGCTCTGACG
GGCAGGGCGG CGGGAAAGAG GCTGGAACGC TGGCAGAGGA TCGCGCGCGA GGCGGTCTGC
CAGTGCGGTA GACTGAACGT GCCCGAGATG GTCATTCTCT CGGACGTTCG GGAATTGCTC
GCGAAGATCG AACAGAGGGA GCGTTCCGGA AACCTGCTGC GGATTCTCGC CTTCGAGAGA
GGGAACGGCA AGGGCATCGT GGATTTGCAT CGCGCATTTC CGCAGTGCAC GGAGGTGATG
GTTGCGGTCG GGCCGGAAGG GGGATGGAGC TCCGAAGAGG CGGAGCTGCT GACCCGCAAT
GGTTTTCATG CGGTCCATCT GGGGCCGAGG ATTCTACGTC TGGAGACGGC GGCGGCCATT
GTGTTGTCGT CGGTCCAACT GTTGTGGGGC GATTTGGGTG CATGA
 
Protein sequence
MTRKRFFVER AVPGEGTIDL GVDAAHHIEH VLRLRAGEEV ELIDGVGGGW LGAIVEAGTG 
TVRVRITGRL GPPAESSLNL SLALAFSRAD RMDLVLRQAT EIGVNRFIAF RSRRSQYALT
GRAAGKRLER WQRIAREAVC QCGRLNVPEM VILSDVRELL AKIEQRERSG NLLRILAFER
GNGKGIVDLH RAFPQCTEVM VAVGPEGGWS SEEAELLTRN GFHAVHLGPR ILRLETAAAI
VLSSVQLLWG DLGA