Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0057 |
Symbol | dapF |
ID | 4461147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 71613 |
End bp | 72476 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639700809 |
Product | diaminopimelate epimerase |
Protein accession | YP_844195 |
Protein GI | 116747508 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.809521 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGTTG AAAACGAACG GACCCGCTTT CTAAAGATGA CCGGGAGCGG GAATGACTTC ATCGTGCTCG ACAACCGCGC TCAGGGGATC AGCCCTGAGC AGGGGCGGGA ACTGGCGCGC CTGGCCTGTC GCAGGAAACT TTCGGTGGGC GCCGACGGGT TGATCCTCAT CGAAAACGAC CCCGAGGTCG ATTTCAGATG GCGCTTTTTC AACGCGGATG GAAGCGAGGC GGAGATGTGC GGCAACGGCG CGCGCTGCGC CGCCAGGTTC GCTCATATCA AGGGGATTGT CGCCAAATCC CGCATGTCCT TCCGGACTCT GGCGGGAATC ATCGAGGCGG AGATCAAGGA ACCGCGAGTC AAGATCCGAA TGACTCCGCC CCATGGTCTG GAACCGGACC TGAATGTCGA GGCCGAACAG CGCTCGTTTC GTCTTCATTT CATCAATACC GGCGTGCCGC ACGTCGTATG CTTCCTCGAG AACGACCGGG CGCTCGAGGA GATGAACGTA TTCCATTGGG GGCGTCTGCT GCGTCACCAC CGGCGATTTC AACCCGCCGG CTCCAACGTC AATTTCGCCC TCGTGGAAGA CGCGAACCAC ATGGCGATCC GCACCTACGA GCGAGGGGTC GAAGACGAGA CGCTGGCGTG CGGAACGGGC TCCATCGCCT CCGCGCTGGT CGCCGCCGCC AAGGGCATGG TGCAATCGCC GGTGGAGGTT CGGACGAGAA GTGGAGAAAC CCTGACCATC TATTTTGACA ACCCGTCCAC CGGGGCCGCG GCGGAGTTCT CACAGGTATA CCTGGAAGGC GACGCGAAAG TGGTCTACGA GGCGGAACTT TGGAAAGAAA CATTGAGGGA ATAG
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Protein sequence | MPVENERTRF LKMTGSGNDF IVLDNRAQGI SPEQGRELAR LACRRKLSVG ADGLILIEND PEVDFRWRFF NADGSEAEMC GNGARCAARF AHIKGIVAKS RMSFRTLAGI IEAEIKEPRV KIRMTPPHGL EPDLNVEAEQ RSFRLHFINT GVPHVVCFLE NDRALEEMNV FHWGRLLRHH RRFQPAGSNV NFALVEDANH MAIRTYERGV EDETLACGTG SIASALVAAA KGMVQSPVEV RTRSGETLTI YFDNPSTGAA AEFSQVYLEG DAKVVYEAEL WKETLRE
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