| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0054 |
|---|
| Symbol | |
|---|
| ID | 4461144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 68460 |
|---|
| End bp | 69626 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639700806 |
|---|
| Product | aminotransferase, class I and II |
|---|
| Protein accession | YP_844192 |
|---|
| Protein GI | 116747505 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03540] LL-diaminopimelate aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.848733 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCG TCAAAGCGGA ACGGTTGAAA CTCCTTCCCC CCTACCTCTT CCAGGAAATC
GACCGGCTCA AAGCCGAGCT CACAGCCAAG GGCGTGGACG TCATCAACCT GGGCGTCGGG
GATCCGGACC TTCCGACTCC CGACCACATT ATCGCAAGGC TCAAGACAGC CGCCGAAGAC
CCGTCCACCC ATCAATATCC TTCTTACTCC GGCATGAACG ATTTCAAGGT GAGCGTCGCG
GGGTGGTATA AGCGCCGGTT CGGCGTGGAG CTCGATCCCT TGAGCGAAGT ATTGACCTTG
ATCGGTTCCA AGGAAGGGCT CGCTCACTTC CCGCTGGCGG TGATCAATCC CGGGGATCTC
GCCCTGGTAC CCACTCCGGC GTATCCGGTC TATCATGTGG CGACGATGTT CGCCGGGGGA
GAATCCTACT TCATGCCCCT GGTGCGGGAG AACGGGTTCC TGCCCGATCT GGACTCCATC
CCCGCGGACG TGGCCAGACG GGCCAAAGTC ATGTTTATCA ATTATCCCAA CAACCCTACA
GGGGCCACCG CCGAGCGGGA TTTCTTCGAA AAGGTCATTG CGTTTGCCCG CGAATACGAC
GTGATTGTGT GCCATGACGC CGCCTATACG GAAATGGCTT TCGGCGGCTA CCGGCCGCTG
AGTTTCCTGG AGCTCCCCGG CGCCGGAGAA GTCGGCGTCG AATTCCATTC CCTTTCAAAG
ACCTATAACA TGACCGGCTG GAGGCTGGGA TTTGCGGTCG GGAACGCGGA CATCCTGGCG
GGACTCGGCC AGGTGAAGAG CAACATCGAT TCCGGGGCGT TCAACGCCGT CCAGTGGGCC
GGCATCACGG CACTCGAAGG CGACCAGGGC TGCGTCGTCG AAATGCAGCG GATTTACAAG
GAACGCCTGG ACATCCTCAT CGAAGGCCTG AAACGCATCG GGTTGCATCC CGAGGTGCCC
AGGGCGACTT TCTATGTCTG GTGTCCGACG CCTCCGGGCT ATTCGTCCAA GGATTTTTCG
TCCCTGCTGT TGAGAGAAGC GGGCATCGTG GCGACGCCCG GAAGCGGCTT CGGGGCGCCG
GGTGAAGGAT ACATCCGCAT GGCGCTCACG GTGGACAAAG AGCGGGTCCG GGAAGCGGTC
GAACGGATGC GGAAGTTGTC TTTTTGA
|
|---|
| Protein sequence | MAFVKAERLK LLPPYLFQEI DRLKAELTAK GVDVINLGVG DPDLPTPDHI IARLKTAAED
PSTHQYPSYS GMNDFKVSVA GWYKRRFGVE LDPLSEVLTL IGSKEGLAHF PLAVINPGDL
ALVPTPAYPV YHVATMFAGG ESYFMPLVRE NGFLPDLDSI PADVARRAKV MFINYPNNPT
GATAERDFFE KVIAFAREYD VIVCHDAAYT EMAFGGYRPL SFLELPGAGE VGVEFHSLSK
TYNMTGWRLG FAVGNADILA GLGQVKSNID SGAFNAVQWA GITALEGDQG CVVEMQRIYK
ERLDILIEGL KRIGLHPEVP RATFYVWCPT PPGYSSKDFS SLLLREAGIV ATPGSGFGAP
GEGYIRMALT VDKERVREAV ERMRKLSF
|
|---|
| |