Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_4063 |
Symbol | |
ID | 4280954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4842475 |
End bp | 4844103 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638136888 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_752727 |
Protein GI | 114565213 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000239208 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATC GGTCTGCTGT TTGTCAGCTT TTTAATGTGG CAACAATGGC AAACAGATAA AGCACCAAAA CCAGCAACAG CACAAACTGT TACTCAAACT AACGCCGCCT CACAACACAG TGCTGACGTT CCAGAAGCAG ATATATCTGG AGTACCAGTA GAATTACCTG CAAATAAAAA CCTTATTAGC GTTAAAACTG ATCAGCTTGA TATTAAAATC AGCCCGATTG GTGGTGACAT AGTTTATGCC GCATTAGTGG AACATAAACG CGAAATTGAC AGTAGTGATC CATTTGTCAT TTTAGAGCAA AAGAACAATT TCACTTATAT CGCCCAAAGC GGACTTATTG GTCGTGATGG TATTGATAGT AGTGCCAATG GTAGAGCAGC TTATAGTGTT CAAACCAATT CATATTCTTT AGCTGATGGT AAAGACACAT TAACCGTGCC ATTTACTTAT ACAGCAGACA ACGGTGTCAC CTACGTAAAA AGCTTTACGT TCACCCGTGG TCAATATGAT GTCGGCGTAG ATTACAGCAT CAGCAATACT TCAGCTGCAC CGTTACAAGT GCAGATGTAT GGTCAAATTA AGCAAACGAT TAAAGAATCT GAAAGCAGCA TGATGATGCC AACCTACCGT GGTGGTGCTT TCTCGGCTCA AGATACTCGT TATGAGAAAT ATAACTTTGA CGATATGGCT GACAAAAATC TTGCTAAAGT AACACTCGGT GGTTGGGCTG CAATGCTACA ACATTACTTT GTGTCAGCTT GGGTGCCGCC AGCAACCGAT TCAAACACCA TTTTCTCAAG TATGAGTGCT GGTGGAATGG CTAATATTGG TTTCCGTGGT GCGGTATATG ATATTGCTCC TGGCGCGACT CAAGAAATTA ACTCGCAGTT TTATGTTGGT CCAAAAAACC AAAAAGAGCT TTCAGCTATT TCTGAAACCT TAAACTTGGT TGTTGATTAC GGCTTCTTAT GGTGGTTAGC CATTCCAATC CATTGGTTAT TGATGTTCTA TCAATCATTT GTGGGTAATT GGGGTGTAGC GATTATTTTG ATCACCCTCA CCGTCCGTGG TGGTCTATAT CCGCTGACTA AAAAGCAATA TACCTCTATG GCCAAAATGC GTAATCTGCA GCCTAAATTG ACAGAGATGA AAGAACGCTT TGGTGATGAC CGTCAAAAGA TGGGTCAAGC TATGATGGAA CTGTATAAGA AAGAAAAAGT AAACCCTATG GGCGGTTGCT TACCTATTCT GTTACAGATG CCAATTTTCA TCGCATTATA CTGGGTACTA CTAGAAAGCT ATGAATTACG CCACGCGCCA TTCATGCTTT GGATTACTGA CTTATCAGTT CAAGATCCAT ACTATGTATT GCCATTGTTA ATGGGCTTAT CAATGTTCTT GATGCAAAAA ATGCAACCGG TAGCGCCAAC AATGGATCCA ATGCAAGTGA AAATGATGCA GTGGATGCCA GTTATCTTTA CCGTATTCTT CTTATGGTTC CCAGCTGGTC TAGTACTTTA CTGGTTAGTG GGTAACTTAG TTGCAATCAC ACAGCAGAAA ATTATTTATG CTGGCCTTGA GAAAAATGGC ATAAAATAA
|
Protein sequence | MESQRNILLI GLLFVSFLMW QQWQTDKAPK PATAQTVTQT NAASQHSADV PEADISGVPV ELPANKNLIS VKTDQLDIKI SPIGGDIVYA ALVEHKREID SSDPFVILEQ KNNFTYIAQS GLIGRDGIDS SANGRAAYSV QTNSYSLADG KDTLTVPFTY TADNGVTYVK SFTFTRGQYD VGVDYSISNT SAAPLQVQMY GQIKQTIKES ESSMMMPTYR GGAFSAQDTR YEKYNFDDMA DKNLAKVTLG GWAAMLQHYF VSAWVPPATD SNTIFSSMSA GGMANIGFRG AVYDIAPGAT QEINSQFYVG PKNQKELSAI SETLNLVVDY GFLWWLAIPI HWLLMFYQSF VGNWGVAIIL ITLTVRGGLY PLTKKQYTSM AKMRNLQPKL TEMKERFGDD RQKMGQAMME LYKKEKVNPM GGCLPILLQM PIFIALYWVL LESYELRHAP FMLWITDLSV QDPYYVLPLL MGLSMFLMQK MQPVAPTMDP MQVKMMQWMP VIFTVFFLWF PAGLVLYWLV GNLVAITQQK IIYAGLEKNG IK
|
| |