Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_4060 |
Symbol | |
ID | 4280951 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4839489 |
End bp | 4840355 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136885 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_752724 |
Protein GI | 114565210 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.833958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAGT GGGAAGGCAT TTTTGAATTT GTGGCGGTGG CCGAAACGGA CAGTTTTACT GTGGCTGGCA AGCGTTTGAG TATTTCTACC GCGCAAGTGA GTCGACAAAT TAGTCAGCTT GAAAACCGTT TAAACACCAA ATTATTTTAT CGCACCACTC GTAAAGTATC GTTAACCGAA GAAGGTACGG TCTATTATCA GCATTGTCGC CAGGTATTAA ACAGTCTTGA TGAAGCAGAA CGCGCTATTT CAAGTTTAAA AGATAAGCCA CAAGGACTTA TTAGAATTAC TGCACCAGTG ACTTACGGTG AAAAGTTTAT CATGCCGATA GTGATTGATT TTATGCAGCA ATATCCTGAC ATTGAAGTGA TTTGTGAGCT GACTAATCAG CAACTTGACT TAGTGGATGG TGGTTATGAT TTGGCGATTA GGTTAGGGCG GTTAACTAAT TCTACTATGA TGGCAAAGCG GCTTACGAGT CGAAGCCAAT ATGTGTGCGC AGCCCCGAGT TATATCGCTA AATACGGTAC GCCTTATGCG TTATCGGAGT TAAGTCAGCA TAATTGTTTA ATCGGCAGTC AGTCACATTG GCATTTTGTT GAGCAAGGTA AACCTAAGAC GGTAAAAGTG CATGGGTCTT TAGCTTGTAG CAGTGGTTTG AGTTTATTGA ATGCAGCTAT ATGTGGTTTG GGGATTGTGC AGTTACCAGG ATATTACGTC AATGATGCTA TAGCAGAGGG GCTGTTAGTG GTATTGCTTG CTCCTTTTCA ACAACCTAAA GAAGGTATTT GGGCTTTGTA TCCGCATAAT CGCCATTTAT CACCCAAAGT CAGATTGCTG GTCGATAAGT TATCGCAAGA GTTGTAA
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Protein sequence | MMKWEGIFEF VAVAETDSFT VAGKRLSIST AQVSRQISQL ENRLNTKLFY RTTRKVSLTE EGTVYYQHCR QVLNSLDEAE RAISSLKDKP QGLIRITAPV TYGEKFIMPI VIDFMQQYPD IEVICELTNQ QLDLVDGGYD LAIRLGRLTN STMMAKRLTS RSQYVCAAPS YIAKYGTPYA LSELSQHNCL IGSQSHWHFV EQGKPKTVKV HGSLACSSGL SLLNAAICGL GIVQLPGYYV NDAIAEGLLV VLLAPFQQPK EGIWALYPHN RHLSPKVRLL VDKLSQEL
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