| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4010 |
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| Symbol | |
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| ID | 4280901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4781134 |
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| End bp | 4783170 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136831 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_752674 |
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| Protein GI | 114565160 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.481444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAAGT TGAACGTTAT TTTTTATTCT GTGCTATTGG CATGCTTTGC TACATCTACA
GCTACTGCCG ATGAATCAAA TTCTTTCGAT CTAAGTCTAC AAGAGTTACT GAATGTTGAG
GTGACTTCGG TATCAAAACA AAAGCAGCCT TTATCGAATT CACCCGCTGC AATCTATGTC
ATCACAAGCG AACATATACG TAATTCTGGT GCTACTTCTA TCCCGCAAGT ACTTCGAGAT
GTGCCAGGGC TGCATGTCGG GCAGATTGAC TCTCAAAAGT GGGCCATCAG TAGCCGTGGT
TTTAATGGGC GCTACAACAA CAAATTACTG GTATTGATGG ATGGCCGAAC CCTTTATTCT
CCAATATTTT CAGGTGTCTA CTGGGAGGTT CAGGATACAC TGATGGCCGA TATTGAACGC
ATAGAAGTTA TACGCGGGCC TAGCGCGGCA ATGTGGGGCG CCAATGCAGT AAACGGTGTG
ATTAATATTA TTACCAAACA CAGTGCTGAT ACATCTGGTG GTTATGCAGA ATTGGGGGCT
GGCGATTATG AGCAAGGATT TGCAGGTTTT CGTTATGGTT CCACATTATC AGATAATGCA
ACATCAAGAG TGTATGTAAA AGGCCATAGC AGAGACTCGC TTGAGTATAA TTCGCAAGAT
CTCGATAGCG GTCTTGCGGA GCAATTAGCC ACTGTTGATA AAGACAACGA TTGGATGCAT
CTTCAAGTGG GAGGCCGCGT TGATATGGAG CTTGATACGG GCACAAGCCT TATGTTGAGC
AGTGATGTGT ACCGCACTGA AATGCAGCAG ACCTCTTATT ACCCTTCATT AGTTGGTCCG
TCATATCGTG ACTTTAATAG TAATGACATC AACAGCGATG GCTTTAATTT ATTATCAAAA
CTCACCAAAG CGTTATCGCC AACCTCTCAA TATAGCCTTC AAGCTTACTA CGATTATGCA
AAAAGAGACG ATGATTGGTA TGGGTTTAGT AGTGAAACGG TTGATGTTGA TTTTCAGCAT
CAGCTACTTG TTGGACAAAA TCATAATATT ATCTGGGGAC TCGGTTACCG CTTTATTCAA
GATGATTTCG ACCAAAGCAC TATTATTGTA AGTAGCGAGT CAGAATCAAC TCGAACCAAT
TTGTGGAGCG CATTTATTCG TGATGAAATT ACGTTAGTTG ATGATGAGTT GTGGTTGACG
CTAGCATCAC GTTTCGAACA CTATGACTAC ACAGGCTTTG AGGTTCAACC GAATGCTCGC
CTGATGTGGC AGTTGAATAA AAAAAATAAT CTGTGGGCCT CTGTTGCACG CGCAATCAGA
ACTCCGTCGC GGATAGAAAA TAATCTATCG GTGAACTCAC AAATCATACC GCCTTCAGTT
CAGTCACCAT TGGTTAGTAT ATGGGTGGCT GGTAACGAGG ATTATAAATC TGAAGTCATC
ATTTCGTATG AGGTAGGTTA TCGATTTACG CCCGCTAAAA AATGGTCATT TGATTCAACA
ATTTTTTATA ACGATTATGA CCAATTGCGC AATGCTCCAG CCGGTGCAAC AGATTTCAGC
ACATTTCCCA ATTACATTTC GCAATACTTA ACATTCAGTA ATGATCTTGA TGGATATAAC
TATGGATTCG AGCTCTCATC TCAGTGGGCT GCAACTGATA CTATCCAATT CAAAGTAAAT
TATAGTTTTA CTCAAAATGA ATTTGGTGCC AGTCAAAGTC AAAATACTGA TGCCCCAGAG
CATATGATAT CGACAATGAT GGATTGGAGC ATTAGCGATA ATGTTGATTT TAATCTAGTT
TGGCGTGTTA TTGATGAAGC TTACGTATTG AATATCAATG ACCTTAGTAC TAAGGAAATT
GATAGCTATA GCGGGGTTGA TTTAGGACTG CACTGGAAGG TTAAGCCTGA TGTCATGTTA
TCAGCGTTCG GGAAAAATTT ACTTCATCCT GCAAACCTTG AGTTTGAAGG AGAAAGTTAC
CAACTCCCTT ATCGTGTGGG ACCAAGTTAT TATATTAAAG CTACTTTGAC CTTTTAG
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| Protein sequence | MLKLNVIFYS VLLACFATST ATADESNSFD LSLQELLNVE VTSVSKQKQP LSNSPAAIYV
ITSEHIRNSG ATSIPQVLRD VPGLHVGQID SQKWAISSRG FNGRYNNKLL VLMDGRTLYS
PIFSGVYWEV QDTLMADIER IEVIRGPSAA MWGANAVNGV INIITKHSAD TSGGYAELGA
GDYEQGFAGF RYGSTLSDNA TSRVYVKGHS RDSLEYNSQD LDSGLAEQLA TVDKDNDWMH
LQVGGRVDME LDTGTSLMLS SDVYRTEMQQ TSYYPSLVGP SYRDFNSNDI NSDGFNLLSK
LTKALSPTSQ YSLQAYYDYA KRDDDWYGFS SETVDVDFQH QLLVGQNHNI IWGLGYRFIQ
DDFDQSTIIV SSESESTRTN LWSAFIRDEI TLVDDELWLT LASRFEHYDY TGFEVQPNAR
LMWQLNKKNN LWASVARAIR TPSRIENNLS VNSQIIPPSV QSPLVSIWVA GNEDYKSEVI
ISYEVGYRFT PAKKWSFDST IFYNDYDQLR NAPAGATDFS TFPNYISQYL TFSNDLDGYN
YGFELSSQWA ATDTIQFKVN YSFTQNEFGA SQSQNTDAPE HMISTMMDWS ISDNVDFNLV
WRVIDEAYVL NINDLSTKEI DSYSGVDLGL HWKVKPDVML SAFGKNLLHP ANLEFEGESY
QLPYRVGPSY YIKATLTF
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